PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g31850
Common NameGSCOC_T00027482001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 545aa    MW: 61733 Da    PI: 6.887
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g31850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97.2e-15126187268
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                  W+++evlaL+++r++me+++ +       We+vs+k+   g++rs+++Ckek+e+ ++ +  ++ ++
  Cc02_g31850 126 WSNDEVLALLRIRSSMENWFPEI-----TWEHVSRKLTGLGYHRSAEKCKEKFEEESRHFNSMNYNK 187
                  ********************998.....9****************************9998877554 PP
2trihelix93.52e-29430519186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++ev+aLi+++ ++ +++ ++      +k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  Cc02_g31850 430 RWPRDEVQALINLKCRLTNNSTSDDsikegAKGPLWERISQGMLELGYKRSSKRCKEKWENINKYFRKTKDNNKKR-SLDSRTCPYFHQLS 519
                  8*************99888888653344559********************************************8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071719122179IPR001005SANT/Myb domain
PfamPF138378.8E-11124197No hitNo description
PROSITE profilePS500906.365125177IPR017877Myb-like domain
PROSITE profilePS500907.062423492IPR017877Myb-like domain
SMARTSM007170.039427494IPR001005SANT/Myb domain
CDDcd122032.95E-22429499No hitNo description
PfamPF138371.8E-18429519No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MFDGVPADQF HQFLAASSRT SLPIPLSFPL HHHGVSIPSS AASVSLASPP LPPTSATPPA  60
PAFLGCFDPY SSPLTLDVQV QPHHHHQQSG LHHQLHHQSP PPTSKNGEEK EEREGSISAA  120
IPLDPWSNDE VLALLRIRSS MENWFPEITW EHVSRKLTGL GYHRSAEKCK EKFEEESRHF  180
NSMNYNKNYR FFSDLDELYN DENPQVSTEK SQDLVKEKDK QEGDNKMDAS TLQEEEDTGN  240
TVAVANPSDQ ENAELVKEST KSRKRKRNHK FEMFKGFCEA VVKKIVEQQE VLHNKLIEDM  300
VRRDRESIAR DEAWKCQEMD RINKEIEMRA QEQAIACDRQ GKIIDLLKKF TSGSEADQSL  360
VRRIEDLLKV TNSSNSVTSS SEILPPSSLN SDQTKLEAVT SASMAISHQN PTLKMVSAPN  420
ERGERIAGKR WPRDEVQALI NLKCRLTNNS TSDDSIKEGA KGPLWERISQ GMLELGYKRS  480
SKRCKEKWEN INKYFRKTKD NNKKRSLDSR TCPYFHQLST LYGQGTLVAP SNLPENHQTS  540
PENH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107424.10.0trihelix transcription factor GTL2-like
TrEMBLA0A068UJ840.0A0A068UJ84_COFCA; Uncharacterized protein
STRINGVIT_14s0030g01860.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-92Trihelix family protein