PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g32250
Common NameGSCOC_T00012959001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 250aa    MW: 26934 Da    PI: 5.0752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g32250genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.81.1e-39481491101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++pe++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela++
  Cc02_g32250  48 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPENRRNDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAVV 145
                  7***********************9989*********************************************************************9 PP

       DUF260  98 keel 101
                  +++l
  Cc02_g32250 146 QTQL 149
                  9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.29147149IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-3948146IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MNDQSKSDQG MSDSGRRKGS SEKRASSIIE ATEGALLNAG VSPPPSAPCG ACKFLRRKCI  60
SGCIFAPHFG SDQGAARFAA VHKVFGASNV SKLLLHIPEN RRNDAVVTIS YEAQARLSDP  120
VYGCVSTILA LQQQVASLQA ELAVVQTQLM NSRLAMANAL RDSQVIQQQQ IVALQPAYSN  180
TSAASNTLMN INSFNSNFDL VGEAAPSNSF DPVHLSQAPE EVEEEDEEES QNHLDFTSQI  240
FHQDNKTFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-39391512113LOB family transfactor Ramosa2.1
5ly0_B8e-39391512113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102478.10.0LOB domain-containing protein 20-like
SwissprotQ9SRV32e-77LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A068VCV10.0A0A068VCV1_COFCA; Uncharacterized protein
STRINGVIT_08s0056g01650.t015e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-62LOB domain-containing protein 20