PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g32450
Common NameGSCOC_T00001245001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 217aa    MW: 23961.9 Da    PI: 5.2885
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g32450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.91.6e-14741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+ +TplWR+gp  ++ LCnaCG ++r +g+
  Cc02_g32450  7 CCHCGVEQTPLWRSGPPEKPVLCNACGSRWRTRGT 41
                 99**************88888**********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-8155IPR000679Zinc finger, GATA-type
CDDcd002021.49E-14641No hitNo description
SuperFamilySSF577161.47E-10644No hitNo description
PROSITE profilePS5011410.475740IPR000679Zinc finger, GATA-type
PfamPF003202.5E-12741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-12742IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVREGPCCHC GVEQTPLWRS GPPEKPVLCN ACGSRWRTRG TLEDYIPKHA IKDPENDHSG  60
KLPSKLNQIS SSSCHSHEQP PILESNIAGQ ELLLPVLGDG TGNGESTPIG ATFSDNFTRV  120
QTIEEAVEFP LWDGNNVFKR KRSILDQHIM SPTEMLHQQL YYALQDSQAA AGDYCNGEEV  180
LIFERINHYI PENEIGLGCI LLQPPASPTK NFKPQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103264.11e-150GATA transcription factor 26-like
TrEMBLA0A068VB781e-160A0A068VB78_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.16e-27GATA transcription factor 26