PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g33240
Common NameGSCOC_T00015347001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 161aa    MW: 17992.1 Da    PI: 5.365
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g33240genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.42.8e-50398297
        NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                  eqdr+lPianv+r+m+++lP  akisk+aket+qec++efisfvt+easdkc +e+rkt+ngdd++wal+tlGf+ y+e++  yl+kyre+e+++
  Cc02_g33240  3 DEQDRLLPIANVGRVMRQILPPSAKISKEAKETIQECATEFISFVTAEASDKCYKENRKTVNGDDICWALSTLGFDTYAEAMLRYLHKYREFERQR 98
                 69*******************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-482134IPR009072Histone-fold
SuperFamilySSF471137.26E-375106IPR009072Histone-fold
PfamPF008089.7E-25872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-173654No hitNo description
PRINTSPR006152.0E-175573No hitNo description
PRINTSPR006152.0E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVDEQDRLLP IANVGRVMRQ ILPPSAKISK EAKETIQECA TEFISFVTAE ASDKCYKENR  60
KTVNGDDICW ALSTLGFDTY AEAMLRYLHK YREFERQRVN QSKASNLENE AHTPIRASTD  120
STDSDGSNLQ PEKQSESPIA FEFRVLEKGQ SSKIKPAATG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-39293192Transcription factor HapC (Eurofung)
4g92_B2e-39293192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103290.11e-118nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-57NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A068V4A01e-116A0A068V4A0_COFCA; Uncharacterized protein
STRINGcassava4.1_032284m2e-68(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.17e-60nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]