PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g33590
Common NameGSCOC_T00015398001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 157aa    MW: 17868.9 Da    PI: 10.1461
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g33590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.12e-1853107151
        NF-YC   1 qlksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskac 51 
                  ql+sfw++q   ie+ + fk +++lP arikki+ka ed +m+saeaP++++ ac
  Cc02_g33590  53 QLQSFWANQrqeIERLAGFKsHNSLPYARIKKIMKAAEDATMVSAEAPIVFAEAC 107
                  89*****998889999****5668******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.07E-944108IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.0E-1372107IPR009072Histone-fold
PfamPF008082.8E-876108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPQLSYAPNL YDGNPGLGSL VTSVGNRPAR LVLKRQGVQL GEKQQQQSEL EQQLQSFWAN  60
QRQEIERLAG FKSHNSLPYA RIKKIMKAAE DATMVSAEAP IVFAEACVWE PGIKLRKPKG  120
RRFKRMILHA IFLGIYMYIF INLYFYAIMH YISACM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109508.12e-74nuclear transcription factor Y subunit C-9-like
RefseqXP_027154918.12e-74nuclear transcription factor Y subunit C-9-like
RefseqXP_027158583.12e-74nuclear transcription factor Y subunit C-9-like
TrEMBLA0A068V4D61e-112A0A068V4D6_COFCA; Uncharacterized protein
STRINGXP_009349978.15e-20(Pyrus x bretschneideri)
STRINGXP_009373981.15e-20(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-19nuclear factor Y, subunit C2