PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g34040
Common NameGSCOC_T00000635001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 204aa    MW: 23096.5 Da    PI: 8.2156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g34040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-124590555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 h  +Er+RR++i ++f  L  l+P +     kK++K ++L  A++Y+k+Lq
  Cc02_g34040 45 HIVAERKRREQISQRFVALSALVPGL-----KKMDKNSVLGDAINYLKHLQ 90
                 8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0914089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-1844106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-104590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-124594No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1745106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-144695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.868130203IPR002912ACT domain
CDDcd021160.00242131188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVLTFGNCQQ VTLGSFSPEG DTIYSKEKEK ENCPSREASI QTYDHIVAER KRREQISQRF  60
VALSALVPGL KKMDKNSVLG DAINYLKHLQ ERVQTLEEQA ANQRRESSMG CTDEQILPEI  120
EAKVCNKNIL LRIHCKNHRG LLVKILSEIE KRNLSVVNTN VAPFGSLALD ISIIAEMDKE  180
FNLTMQELVR RLRSALRQVQ QSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102494.11e-87transcription factor bHLH25-like
RefseqXP_027109704.18e-87transcription factor bHLH18-like
RefseqXP_027109705.18e-87transcription factor bHLH18-like
RefseqXP_027154852.11e-87transcription factor bHLH25-like
SwissprotQ9T0727e-46BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A068V9L91e-147A0A068V9L9_COFCA; Uncharacterized protein
STRINGcassava4.1_010938m2e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-48bHLH family protein