PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g34640
Common NameGSCOC_T00000723001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 167aa    MW: 18623.7 Da    PI: 10.7119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g34640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.5e-202760134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C+ C+ttkTplWR+gp g+k+LCnaCG+++rkk+
  Cc02_g34640 27 CVDCKTTKTPLWRSGPAGPKSLCNACGIRHRKKR 60
                 ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-152172IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7432157IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-132266No hitNo description
Gene3DG3DSA:3.30.50.106.4E-162560IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-172760IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
CDDcd002021.08E-122760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDPNKKVEEE ILPPQEMITR TADEKCCVDC KTTKTPLWRS GPAGPKSLCN ACGIRHRKKR  60
AATGTSPATS TATVGLDKEE EKIKKEKHEE TIVKKKRRAN IRDGKCGKLS VGWRQRFRAF  120
GQGVVLYQRQ RSPVLRKRQS IHHRKLGEVE QAAVLLMALS CGSVFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102498.11e-119GATA transcription factor 16-like
TrEMBLA0A068V9S91e-118A0A068V9S9_COFCA; Uncharacterized protein
STRINGXP_009612537.16e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-25GATA transcription factor 16