PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g35540
Common NameGSCOC_T00042833001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 137aa    MW: 15473.7 Da    PI: 8.2021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g35540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.7e-116891427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                   C++f rtG C+yGd+Ck+ H++
  Cc02_g35540 68 GVCNRFVRTGSCQYGDSCKYYHPK 91
                 57********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.005338IPR003604Zinc finger, U1-type
SuperFamilySSF576672.07E-14443No hitNo description
PfamPF062202.4E-9538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.1176492IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-76692IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-56691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-76790IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-86891IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARKRHLQGVH HQRAKALWYD SLRFLQMLLF LLADVNQIPD  60
PGTLGKQGVC NRFVRTGSCQ YGDSCKYYHP KQNPNDQVLP GQMSSQNVQI SWGNLPPSLM  120
PPPEAGYPPL PFIDWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108013.16e-99zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP114e-44C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A068V5T71e-97A0A068V5T7_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000070916e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-43C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]