PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g35890
Common NameGSCOC_T00042778001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 260aa    MW: 29555.1 Da    PI: 9.752
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g35890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12.1e-171050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +i n+s r+ tf kR++g++KK  ELS+LC+++++ ii+s+
  Cc02_g35890 10 FITNDSARKATFKKRKKGLMKKVGELSTLCGIDACAIIYSP 50
                 89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.79E-24185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.792149IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-24160IPR002100Transcription factor, MADS-box
CDDcd002663.99E-22285No hitNo description
PRINTSPR004045.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVGELSTLCG IDACAIIYSP YESQPEVWPN  60
TMGVQRVISQ FKRMPEMEQS KKMVNQESFI RQRIAKANEQ LKKQHKDNRE KEMTEVMYQC  120
LTGKGMQNMS MPDLNDLGWL IDQNLKEIYK RIDSLKKMAP HHQQISQPQA ATAPPPPAQP  180
PAHPPVTLAA NDMLAGGVQV QEQKPSVDLT MDAAVHRPQW FTDWMNNPAG ENMGFGHGDE  240
MMMQFHDNHN PMWSSAFFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102546.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-65AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A068V5P90.0A0A068V5P9_COFCA; Uncharacterized protein
STRINGXP_009774462.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-66AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]