PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g36620
Common NameGSCOC_T00003900001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 242aa    MW: 25330.8 Da    PI: 7.5559
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g36620genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.3e-39251251100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPv G+v++i++lqqq+ +l+ael++l
  Cc02_g36620  25 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVFGCVAHIFALQQQVVNLQAELSYL 122
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  + +
  Cc02_g36620 123 QGH 125
                  865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.84724126IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3825123IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSANTSSSPS GGAAGSSSGN TGGGPCGACK FLRRKCVAGC IFAPYFDSEQ GAAHFAAVHK  60
VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVFG CVAHIFALQQ QVVNLQAELS  120
YLQGHLATLE LPPPPPPSAQ PQPIIAPPSL TIADLPTGSS SAPATYDLSS LFDPVVQLPW  180
TMQQPRQMDS HQFGAARAPA EASSSAGTGD LQELARELLH RHRTSSTVPC NEVPPLPPHS  240
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-36231209105LOB family transfactor Ramosa2.1
5ly0_B5e-36231209105LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102496.11e-176LOB domain-containing protein 30-like
SwissprotO813232e-79LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A068VAN41e-174A0A068VAN4_COFCA; Uncharacterized protein
STRINGXP_009604912.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.19e-79LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]