PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g36630
Common NameGSCOC_T00003899001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 202aa    MW: 21614.8 Da    PI: 8.1595
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g36630genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.6e-39111111100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC k+C++apyf  eq +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l+aela +
  Cc02_g36630  11 PCGACKFLRRKCLKGCIFAPYFDPEQgTAHFAAVHKVFGASNASKMLLRVPAHKRLDAVVTLCYEALARIRDPVYGCVGHLFTLQQQVVNLQAELACA 108
                  7*********************666659********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Cc02_g36630 109 QAR 111
                  876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.01710112IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSGTGHNGSG PCGACKFLRR KCLKGCIFAP YFDPEQGTAH FAAVHKVFGA SNASKMLLRV  60
PAHKRLDAVV TLCYEALARI RDPVYGCVGH LFTLQQQVVN LQAELACAQA RLSTLQRLPS  120
MLPPPAQGPS PGNFQSCTAN ASSIHNLEPP LPSEQTSMDM EGFSNPVNDR DLGGGDDLHA  180
FAQGFVSRYL PEVKFKPCTS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3841234127LOB family transfactor Ramosa2.1
5ly0_B3e-3841234127LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107812.11e-148LOB domain-containing protein 19-like isoform X1
SwissprotO221322e-69LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A068VAE71e-147A0A068VAE7_COFCA; Uncharacterized protein
STRINGcassava4.1_030486m2e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.18e-72LOB domain-containing protein 19