PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g36980
Common NameGSCOC_T00028050001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28229.4 Da    PI: 9.3497
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g36980genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.4e-32958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  Cc02_g36980  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                 79**********************************************95 PP
2K-box1011.7e-3378169798
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++++e++++s++qe++kLk+++e+Lqr qRhllGedL++L++keLq+Le+qLe +l + R++K++l++eq+eel++ke++l + nk+L+ k+
  Cc02_g36980  78 ENAAERETQSWYQEVSKLKAKYESLQRAQRHLLGEDLGPLNVKELQNLEKQLEGALLQARQRKTQLMIEQMEELRRKERQLGDLNKQLKIKV 169
                  3478999*********************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.683161IPR002100Transcription factor, MADS-box
CDDcd002651.79E-45273No hitNo description
SuperFamilySSF554554.97E-34288IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-2981169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.56185175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSS  60
GITKTLERYQ RCSLSPQENA AERETQSWYQ EVSKLKAKYE SLQRAQRHLL GEDLGPLNVK  120
ELQNLEKQLE GALLQARQRK TQLMIEQMEE LRRKERQLGD LNKQLKIKVS LEMSSLEAAE  180
GQGLRALPCL WSSSVPSGSS MFPMHPSAMD CDPEPVLQIG YHHQYAPAEG PSAPRSMAIE  240
SNIIQGWAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22169169MEF2C
5f28_B4e-22169169MEF2C
5f28_C4e-22169169MEF2C
5f28_D4e-22169169MEF2C
6byy_A4e-22179178MEF2 CHIMERA
6byy_B4e-22179178MEF2 CHIMERA
6byy_C4e-22179178MEF2 CHIMERA
6byy_D4e-22179178MEF2 CHIMERA
6bz1_A4e-22179178MEF2 CHIMERA
6bz1_B4e-22179178MEF2 CHIMERA
6bz1_C4e-22179178MEF2 CHIMERA
6bz1_D4e-22179178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4832450.0KJ483245.1 Coffea arabica AGL6 (AGL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109717.11e-164MADS-box transcription factor 6-like
RefseqXP_027115031.11e-164MADS-box transcription factor 6-like
RefseqXP_027163327.11e-164MADS-box transcription factor 6
SwissprotQ8LLR11e-138MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A068UKB40.0A0A068UKB4_COFCA; Uncharacterized protein
STRINGXP_009796076.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-106AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]