PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g37070

Common Name

GSCOC_T00028040001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 309aa MW: 33190.5 Da PI: 10.7193

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g37070	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.4	5.2e-38	90	198	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg...... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ ++ s a++++s+ Cc02_g37070 90 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvngtLKVPTTSPAAADNSNtvkrkr 187 689*************************************************************7777733322221111111111111111111111 PP TCP 89 .....kaaksaakskksqksa 104 s +++ Cc02_g37070 188 krpsnY----------SADQH 198 111110..........11111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.4E-32	94	213	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.436	96	150	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGSAQKLELH GDQSRNGSNL NNPWPRPPST AVQPLRMPPA PPMAIPLISL KEEPDDHGED 60 KPPIPMARSS QPLPMPTPLQ MRQPVAPPTP PKRTSTKDRH TKVEGRGRRI RMPATCAARV 120 FQLTKELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVNGTLKVP TTSPAAADNS 180 NTVKRKRKRP SNYSADQHVN MPTNTDDNVA TSTGNTSTSS TTTMSTFSSN NPSILAPLMA 240 IQPTNQSQIL AIPPNVNVNV TPFINVSARP ISAFIASSST TPSAANATRT QVLREFSLEI 300 HDKHEQQN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	189	VKRKRKRP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00638	PBM	Transfer from Lj0g3v0004489	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103361.1	1e-175	transcription factor TCP9-like
Swissprot	Q9LT89	7e-62	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A068UKS1	0.0	A0A068UKS1_COFCA; Uncharacterized protein
STRING	VIT_15s0048g01150.t01	4e-77	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	6e-57	TCP family protein