PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g37380
Common NameGSCOC_T00027998001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 831aa    MW: 90045.4 Da    PI: 6.4236
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g37380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-21125180156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Cc02_g37380 125 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 180
                  688999***********************************************999 PP
2START203.77.8e-643385651206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela++a++elvk+a+ +ep+W +s     e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    + +t++vi
  Cc02_g37380 338 ELALAAMNELVKLAQTDEPLWLRSLeggrEILNHEEYMRTFTPCIGvkptgFVTEASRETGMVIINSLALVETLMDAN-KWAEMFPcmiaRTSTTDVI 434
                  5899**************************************99889*******************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                  s g      galqlm  elq+lsplvp R++ f+R+++q+ +g+w++vdvSvds ++ +    s+ + R+++lpSg+l+e+++ng+skvtwveh+d++
  Cc02_g37380 435 SGGmggtrnGALQLMHGELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDSIRETSGggaSPTFPRSRRLPSGCLVEDMPNGYSKVTWVEHADYD 532
                  *********************************************************999999*********************************** PP

                  SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                  ++++h+l+r+l++ g+ +g ++w atlqrqce+
  Cc02_g37380 533 ESMIHQLYRPLIGAGMGFGSQRWIATLQRQCEC 565
                  *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-20109182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-21112182IPR009057Homeodomain-like
PROSITE profilePS5007117.216122182IPR001356Homeobox domain
SMARTSM003899.9E-18123186IPR001356Homeobox domain
CDDcd000861.35E-18124182No hitNo description
PfamPF000461.4E-18125180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PROSITE profilePS5084845.064329568IPR002913START domain
SuperFamilySSF559611.35E-33331565No hitNo description
CDDcd088753.07E-121333564No hitNo description
SMARTSM002341.6E-53338565IPR002913START domain
PfamPF018524.7E-56338565IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-4443538IPR023393START-like domain
SuperFamilySSF559615.44E-24586815No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MNFGGFLDNN SVGGGGAKIV ADIPYSDSNN VNSSNTNMPA SAAIAQPRLA TQSLSKSMFS  60
SPGLSLALQT SLEGQEVRRM SENYESNMNF GRRSRDEEHE SRSGSDNMEG GSGDDQEAAD  120
KPPRKKRYHR HTPQQIQELE ALFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK  180
TQLERHENSI LRQENDKLRA ENMSIREAMR NPICTNCGGP AIIGEVSLEE QHLRIENARL  240
KDELDRVCTL AGKFLGRPIS SSAASMAPPL PNSSLELGVG GNGFASLSTV PATLPLGPPD  300
FGVGIGNPLS VMAGPTKAAA TTGGTGIERS LEKSMYLELA LAAMNELVKL AQTDEPLWLR  360
SLEGGREILN HEEYMRTFTP CIGVKPTGFV TEASRETGMV IINSLALVET LMDANKWAEM  420
FPCMIARTST TDVISGGMGG TRNGALQLMH GELQVLSPLV PVREVNFLRF CKQHAEGVWA  480
VVDVSVDSIR ETSGGGASPT FPRSRRLPSG CLVEDMPNGY SKVTWVEHAD YDESMIHQLY  540
RPLIGAGMGF GSQRWIATLQ RQCECLAILM SSSVAPRDHT AITASGRRSM LKLAQRMTDN  600
FCAGVCASTV HKWNKLCAGN VDEDVRVMTR KSVDDPGEPP GIVLSAATSV WLPVSPQRLF  660
DFLRDERLRS EWDILSNGGP MQEMAHIAKG QDHGNCVSLL RASAMNANQS SMLILQETCI  720
DAAGSLVVYA PVDIPAMHVV MNGGDSAYVA LLPSGFAIVP DGPGSRGPLP NGLTNGPTSH  780
RVSGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALHCES *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108261.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A068UK790.0A0A068UK79_COFCA; Uncharacterized protein
STRINGXP_009602856.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]