PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g38460
Common NameGSCOC_T00027860001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 339aa    MW: 37628.8 Da    PI: 9.7623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g38460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.7e-1377121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT +E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Cc02_g38460  77 RESWTDQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 121
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1671127IPR009057Homeodomain-like
PROSITE profilePS5129415.01472126IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-675127IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-1875124IPR006447Myb domain, plants
SMARTSM007171.4E-1076124IPR001005SANT/Myb domain
PfamPF002499.6E-1177121IPR001005SANT/Myb domain
CDDcd001675.72E-879122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVSVYPTPPA AHQQDFYYFP GMGDPMKVVL PGLHSLQPPT NVNGTTGTGN VIDSGTSVVP  60
EDPNKKVRKP YTITKSRESW TDQEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK  120
YFLKVQKSGT SEHVPPPRPK RKASHPYPQK APKTAGPHVT GQLHSSSALV EPKYVMRPDS  180
LSVPGNSVSN PVVSPWTYNT VPTANTLYMT KDKDMGLAGA TITHNYSSSS NESTPRIWPI  240
NETSDQVKEK DNKLARVMPD FAQVYSFIGS IFDPNASDHL LRLRKMDPIN METVLMLMKN  300
LSVNLVSPEF EDHRRLIASS GGGTEEYKQK APNKMIPA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160426.10.0protein REVEILLE 3 isoform X1
RefseqXP_027160427.10.0protein REVEILLE 3 isoform X1
RefseqXP_027160428.10.0protein REVEILLE 3 isoform X1
SwissprotQ8H0W33e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A068UME00.0A0A068UME0_COFCA; Uncharacterized protein
STRINGXP_009617756.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-97MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]