PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g38600

Common Name

GSCOC_T00027842001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 236aa MW: 26296 Da PI: 8.8036

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g38600	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.6e-32	153	211	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrC++++C+vkk+v+r ++d+++v++tYeg Hnh+ Cc02_g38600 153 LDDGYRWRKYGQKSVKNSKYPRSYYRCSHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 211 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.1E-33	140	211	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-28	146	212	IPR003657	WRKY domain
PROSITE profile	PS50811	28.438	148	213	IPR003657	WRKY domain
SMART	SM00774	6.9E-38	153	212	IPR003657	WRKY domain
Pfam	PF03106	8.3E-26	154	211	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MNLRSSPLLF MEGQDQETPP LPLPVPSPPT NPSFLFAQPH LPSPNSSLIF PNISHSQPLV 60 LQDNLHDLVG LFSAPPPTPS GIPNIAHDNT NDQIMMPSLE TAPLTISDNA VAPSPEEVAI 120 KDKIRRAASS SSKNRKNTVP KVVFQTRSPD DILDDGYRWR KYGQKSVKNS KYPRSYYRCS 180 HHTCNVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLS PLLEQIQFLT RPVLM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-25	141	210	2	71	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027102531.1	1e-172	probable WRKY transcription factor 51 isoform X1
Refseq	XP_027109730.1	1e-172	probable WRKY transcription factor 51 isoform X1
TrEMBL	A0A068UKL8	1e-171	A0A068UKL8_COFCA; Uncharacterized protein
STRING	Aquca_013_00218.1	2e-62	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	1e-54	WRKY DNA-binding protein 56