PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g38720

Common Name

GSCOC_T00027821001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 261aa MW: 30038.7 Da PI: 8.3563

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g38720	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.4e-07	57	90	2	35
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvC 35 +Y++YA++ GFsvr+++ +ks+ n++i+ ++f+ Cc02_g38720 57 CYSNYAHNKGFSVRRNRITKSRSNKSIIGQEFKY 90 7****************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MERELGTECP MEQDQVDHDA AHGSMPEDST NEQIEPGKDV NLYVGMGFES LGDAFKCYSN 60 YAHNKGFSVR RNRITKSRSN KSIIGQEFKY KLQNNTWIQK VYSIRERWVP AFVHASFCAG 120 MSTTQRSESM NKFFKDYLNS STAMSKFVTQ YDRAIKARYD KEKEKNFNTK NTKPILKTLM 180 CFNDIMVRLQ ALSNKLDDLP YENEQANNLS ISQVDSHSEI HDLTQGQHIS KECNSIQPRN 240 SCIKRLSSHL TDEGWFRKVS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027071220.1	5e-51	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027099193.1	3e-52	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A068UKD9	0.0	A0A068UKD9_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-18	FAR1-related sequence 5