PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g39920
Common NameGSCOC_T00027642001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 385aa    MW: 43689 Da    PI: 8.1646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g39920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-52111341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd++   ++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s +++
  Cc02_g39920  11 VPPGFRFHPTEEELLQYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQG--STPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYS-NSR 104
                  69****************************.9***************84..34678**************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   +g++ktLvfykgrap+g+k+dW+mheyrl
  Cc02_g39920 105 RIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 134
                  9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-587171IPR003441NAC domain
PROSITE profilePS5100556.63211171IPR003441NAC domain
PfamPF023659.5E-2812134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MRISVNGQSQ VPPGFRFHPT EEELLQYYLR KKVAYEKIDL DVIRDVDLNK LEPWDIQGST  60
PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIY SNSRRIGMRK TLVFYKGRAP  120
HGQKSDWIMH EYRLDDNSTS NNAAEVENVC NAAGEAAAQE EGWVVCRIFK KKNHHIIKSL  180
DHATPFVTTC SIVTTAECTR GPRQRLIGSS DDDDDERSME KILEYMGRTW AEERGRDQAN  240
QSATPMFPMM PVDIVTKSTG QLCDRFMKLP GLESPKSSPR TTTACTHACY QPITSLHVLP  300
GRVNTTSTNY RPSETAAGLS DWAALDRLVA THLNGQNETA KHFCNNNNNN RRDYHHDECE  360
LWSFVRSSLA PADPPFSHMP NVRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47817314167NO APICAL MERISTEM PROTEIN
1ut4_B1e-47817314167NO APICAL MERISTEM PROTEIN
1ut7_A1e-47817314167NO APICAL MERISTEM PROTEIN
1ut7_B1e-47817314167NO APICAL MERISTEM PROTEIN
3swm_A1e-47817317170NAC domain-containing protein 19
3swm_B1e-47817317170NAC domain-containing protein 19
3swm_C1e-47817317170NAC domain-containing protein 19
3swm_D1e-47817317170NAC domain-containing protein 19
3swp_A1e-47817317170NAC domain-containing protein 19
3swp_B1e-47817317170NAC domain-containing protein 19
3swp_C1e-47817317170NAC domain-containing protein 19
3swp_D1e-47817317170NAC domain-containing protein 19
4dul_A1e-47817314167NAC domain-containing protein 19
4dul_B1e-47817314167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108583.10.0NAC domain-containing protein 43 isoform X2
SwissprotQ84WP61e-114NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A068UK090.0A0A068UK09_COFCA; Uncharacterized protein
STRINGVIT_15s0048g02660.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-93NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]