PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g39990
Common NameGSCOC_T00027631001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 762aa    MW: 82973.1 Da    PI: 6.5978
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g39990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
      Cc02_g39990 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-171874IPR009057Homeodomain-like
PROSITE profilePS5129420.1731973IPR017930Myb domain
TIGRFAMsTIGR015577.0E-172271IPR006447Myb domain, plants
SMARTSM007171.1E-122371IPR001005SANT/Myb domain
PfamPF002493.1E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-82464IPR009057Homeodomain-like
CDDcd001671.47E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MDTYSSGEEL IIKARKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEALAKG TPIGQALDIE IPPPRPKRKP CNPYPRKMSI GLPTSQVESK  120
DGKLGNPSSS LPQAEHILDL ENEPAAEKPE GEKFEDAKEN RDEGESNKCF NLLQASPGIP  180
PSSANTCSST MASGKSSVLM EFVPIFNEVV NRDETTESYV TVEAGPNQNS DKFYTIQSFE  240
ENGTCNSRNW ANAHSLNDKP AQNKGNVPEQ SENIDTSPKN GVQSPKSQPR HVAVHILDGS  300
LRMNAPNVSA HMPYEESLFL EIGGVNSNIF STLSSSATSE HQSSASRFSI SEPFVGFNPI  360
LTPVHQEDYH SFLHASSTFS NLIVSALLQN PMAHAAASFA ASLWPCSTTE APAESPGGGT  420
GGFTARQMNA APSITSIATA TVAAATAWWT AHGLLPLCAP FHMGLNYVPV SGSAVPAVTN  480
QPRVDITERR EEISGPPLDA KHLEPEYCEA LQEQHSTSKS PTLSLSDSVE SKGLNSSNKS  540
TAKKTDSAAV TDLNDSNKPK GRKRVDRSSC GSNTPSSSEV ETDALEKLEK GKEELREPVV  600
SQPTADSSGR RSRSSSSTSD SWKEVSEEGR LAFQALFSRE VLPQSFSPPH DSKNKGKNTN  660
EKNKDNADGK GDKGYLLDLN GKMCTNSATH QDLENNLSLR CLNITEGGLL TTGKLKMRRT  720
GFKPYKRCSV EAKENRLVSA GSQEEEKGTK RIRLEGEAST H*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027159704.10.0protein LHY
RefseqXP_027159706.10.0protein LHY
RefseqXP_027159707.10.0protein LHY
TrEMBLA0A068UJ960.0A0A068UJ96_COFCA; Uncharacterized protein
STRINGVIT_15s0048g02410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97101315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.32e-50MYB_related family protein