PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc03_g03220

Common Name

GSCOC_T00026004001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NF-YC

Protein Properties

Length: 228aa MW: 25637.1 Da PI: 6.1499

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc03_g03220	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.4	6.9e-56	50	153	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdflvdi Cc03_g03220 50 QLQNFWANQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 147 89****9999********************************************************************************** PP NF-YC 96 vprdel 101 vpr++l Cc03_g03220 148 VPREDL 153 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.64E-34	38	144	IPR009072	Histone-fold
Pfam	PF00808	2.6E-22	72	135	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.2E-38	73	150	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MDQQGNGQLP AGPVQAPQTA GLPASSTQMA QHQLAYQHIH QQQQQQLQQQ LQNFWANQYQ 60 EIEQVTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA RACEMFILEL TLRAWNHTEE 120 NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKEEMLAS IPRGPLPVGG PAEGVPYYYM 180 SAQSAPPVGA PGMYMGKPVD QALYGHQPRP YMPQQMWPHQ QQPPADS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-61	57	150	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027116216.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027116217.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027116218.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027116219.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027116220.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027121249.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027121250.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027121251.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X2
Refseq	XP_027164984.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_027164985.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_027164986.1	1e-168	nuclear transcription factor Y subunit C-9-like isoform X1
Swissprot	Q8L4B2	3e-84	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A068TUH8	1e-166	A0A068TUH8_COFCA; Uncharacterized protein
STRING	XP_009590081.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	3e-81	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]