PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g05060
Common NameGSCOC_T00026243001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 197aa    MW: 21849.8 Da    PI: 8.7413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g05060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014668123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  Cc03_g05060 46 YSCSFCKREFRSAQALGGHMNVH 68
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-64372No hitNo description
PROSITE profilePS5015711.244673IPR007087Zinc finger, C2H2
PfamPF139123.0E-64669IPR007087Zinc finger, C2H2
SMARTSM003550.0064668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNNNNSHKKN AGCYKVKNPP WDFLNDCNGT EEADLLGLFS WPPRSYSCSF CKREFRSAQA  60
LGGHMNVHRR DRARLRQSPP RDGQYSLLNL NLEPNPNFST FNTNPSPSAR CPLMPSTFPS  120
PIPPPVSTIS TTPPATVTGM RIWGDKDGGA TKRLLELHEK EGSLLKRGDI VKLELEIGLV  180
GEAKQDLDLE LRLGYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-134168229superman protein
2l1o_A1e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1238950.0GU123895.1 Coffea arabica clone BAC 140-17D, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027164902.11e-134transcriptional regulator SUPERMAN-like
TrEMBLA0A068TT601e-143A0A068TT60_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_44.993e-42(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-25C2H2 family protein