PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g06560
Common NameGSCOC_T00026456001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 260aa    MW: 30316.1 Da    PI: 9.9462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g06560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.2e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
      Cc03_g06560 17 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64
                     79********************************************97 PP
2Myb_DNA-binding51.13e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E++ ++++++++G++ W+tIar ++ gRt++++k++w+++
      Cc03_g06560  70 RGQITPHEEKVILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1751268IPR017930Myb domain
SuperFamilySSF466899.36E-3114111IPR009057Homeodomain-like
SMARTSM007172.4E-171666IPR001005SANT/Myb domain
PfamPF002495.2E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241871IPR009057Homeodomain-like
CDDcd001671.58E-121964No hitNo description
SMARTSM007175.3E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129419.0869119IPR017930Myb domain
PfamPF002491.4E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2472118IPR009057Homeodomain-like
CDDcd001671.06E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAAEQLAWGV MEEGWRKGPW TAEEDRLLIE YVKLHGEGRW NSVARLAGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPHEEKV ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK  120
VSSDNSEKSK ARLLRRQQFQ QQQLLLQQQQ QQQQTQVFDM RRLMSLLEEN ENRVPTLPQM  180
KQDASAAATT IFPNTIDDHH QVFLYSVFNN SAALPEATNH DQDINWDGLW NMDEFSGNIY  240
YSNSANRATL RTSAATPYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP9661001e-91KP966100.1 Lablab purpureus R2R3-MYB factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027165918.10.0transcription factor MYB48
TrEMBLA0A068TTG30.0A0A068TTG3_COFCA; Uncharacterized protein
STRINGPOPTR_0008s17350.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-80myb domain protein 305