PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g07150
Common NameGSCOC_T00026555001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 292aa    MW: 32188.7 Da    PI: 6.3934
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g07150genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.5e-18208242135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C++ +Tp+WR gp g+ktLCnaCG++y++ +l
  Cc03_g07150 208 CLHCQADQTPQWRAGPMGPKTLCNACGVRYKSGRL 242
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.5E-17202252IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.004202238IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.61E-15204265No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14205240IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.23E-14207255No hitNo description
PfamPF003201.1E-15208242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDALHNPDVA GAVAGCFMLD DEDDLLNFSL DDGEEEKENK NPSPFLKDPY SFSPSNTLIS  60
HQDDDLSRSP SFPEFEEELE WLSNKDAFPA VETCFDLLSE TPDFDGLNHQ SPVSVLENSS  120
SSSNSNGSNS SNGSAVMSCC ENLKVPSSFP VRPRSQRRRR KRRSGFGDLP SQEWQWWNHV  180
NIKSNRQELA LPPVPVKANT SATIGRRCLH CQADQTPQWR AGPMGPKTLC NACGVRYKSG  240
RLVPEYRPAS SPTFSAALHS NSHRKIVEMR RQKQPGIGGI MANGSCGYRV G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RRRRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116739.10.0GATA transcription factor 1-like
TrEMBLA0A068TT170.0A0A068TT17_COFCA; Uncharacterized protein
STRINGXP_009767386.14e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-41GATA transcription factor 1