PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc03_g09160

Common Name

GSCOC_T00042706001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 1108aa MW: 118626 Da PI: 4.3283

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc03_g09160	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Cc03_g09160 22 HVCHKCGWPFPNPHPSAKHRRAH 44 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence Send to blast
MDVQDHKKTP SSAGGHEGHG VHVCHKCGWP FPNPHPSAKH RRAHKRVCGK VEGYKLVDSE 60 TDHISDDDHL SDDDIVKTPS PKMEKGSVKE VGSGAGIGLK SSKSEDDVFS DAVTEFSDSG 120 ISPSIEERLE SVREVDNTVG AELVHELNDS QKSEDCRADD TTKQLDDLTT GREISNAEVV 180 ESVINEAENT KPASDNRAEE VSFGVEQTDG LQINSSPNVF ETISEDLVAN AESGKQKEIG 240 SSKSETNIQV KESVNEVESS TESVVLLSKS PDEASLSKSK SDVAEGSSGC LVVETMEHEA 300 DRKVSDTMTM EPKLHEASGS ISHAAAVKEI VEQEKEPSNK SEARMTSVST INEIIEQEKG 360 LSNVLQAEMT KVDLPSQTEP HKCTDTSVTT QAEADSAGDT IRVGHDELAK VCDLKEGGDK 420 EVHVVSVAET LPMVENPEIM IGDFKDYKVL RSSFPVDLGD AEVTRSGEDA NKVNLPESVL 480 SPSSSVPVGR LHTSNLNSSC SEASLEKEGL LTPVQGEVDT SGLRGISEEG SGSNGLEGSS 540 VNSGFEKQVI EGCQPKPTDK ESSQDGVSAP SSIEHSDVMR AVSSIDEEFS SQTTKLSNFD 600 NDVNLKSDHV RSENGTDHLL DEDNISSSKK CTIEVDVETS QGTETGRSTE VQRSEGVFVV 660 DPDLIPEGHS VASGEQSENP KEMEAQISSS DSQLKPEDHG GASDKKSEDY KEAAGLPVAS 720 TNSSQSSATV EDKITNDAVT SEIGKSTEVQ RSEDVFVVDP DLSPEGHSVA SGEQSENPKE 780 METQSSSSVS QLKPEDHGGA YDKKLEDYKE AAAFPVASTI SSQSSATVED KITNDAVISQ 840 PLLDGDNGKL TKESVHVSAV DDSVVSSSRT ESLDGNWGSV SVLSTQSDGT ALVDAETLSS 900 AGNQGPEKSG VMSLKLQTPS QDSHPDKSDA FEPPSFMTLV ESRVEDDKKD VATETHNIQK 960 TEQPNSEALQ AGWFPSLTNV VNESEGRKKN EEIIAKVTNW NAGKQHSPLK NLLNEAQAET 1020 KVKSADQKQV PSVNQGNETV SKNNGAAVTT VGSIMGSETP VDNAAKRDME KEWNSPARYP 1080 VEIKKEKKKG KPYWVPFVCC TSIHQDL*

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence Send to blast

MDVQDHKKTP SSAGGHEGHG VHVCHKCGWP FPNPHPSAKH RRAHKRVCGK VEGYKLVDSE  60
TDHISDDDHL SDDDIVKTPS PKMEKGSVKE VGSGAGIGLK SSKSEDDVFS DAVTEFSDSG  120
ISPSIEERLE SVREVDNTVG AELVHELNDS QKSEDCRADD TTKQLDDLTT GREISNAEVV  180
ESVINEAENT KPASDNRAEE VSFGVEQTDG LQINSSPNVF ETISEDLVAN AESGKQKEIG  240
SSKSETNIQV KESVNEVESS TESVVLLSKS PDEASLSKSK SDVAEGSSGC LVVETMEHEA  300
DRKVSDTMTM EPKLHEASGS ISHAAAVKEI VEQEKEPSNK SEARMTSVST INEIIEQEKG  360
LSNVLQAEMT KVDLPSQTEP HKCTDTSVTT QAEADSAGDT IRVGHDELAK VCDLKEGGDK  420
EVHVVSVAET LPMVENPEIM IGDFKDYKVL RSSFPVDLGD AEVTRSGEDA NKVNLPESVL  480
SPSSSVPVGR LHTSNLNSSC SEASLEKEGL LTPVQGEVDT SGLRGISEEG SGSNGLEGSS  540
VNSGFEKQVI EGCQPKPTDK ESSQDGVSAP SSIEHSDVMR AVSSIDEEFS SQTTKLSNFD  600
NDVNLKSDHV RSENGTDHLL DEDNISSSKK CTIEVDVETS QGTETGRSTE VQRSEGVFVV  660
DPDLIPEGHS VASGEQSENP KEMEAQISSS DSQLKPEDHG GASDKKSEDY KEAAGLPVAS  720
TNSSQSSATV EDKITNDAVT SEIGKSTEVQ RSEDVFVVDP DLSPEGHSVA SGEQSENPKE  780
METQSSSSVS QLKPEDHGGA YDKKLEDYKE AAAFPVASTI SSQSSATVED KITNDAVISQ  840
PLLDGDNGKL TKESVHVSAV DDSVVSSSRT ESLDGNWGSV SVLSTQSDGT ALVDAETLSS  900
AGNQGPEKSG VMSLKLQTPS QDSHPDKSDA FEPPSFMTLV ESRVEDDKKD VATETHNIQK  960
TEQPNSEALQ AGWFPSLTNV VNESEGRKKN EEIIAKVTNW NAGKQHSPLK NLLNEAQAET  1020
KVKSADQKQV PSVNQGNETV SKNNGAAVTT VGSIMGSETP VDNAAKRDME KEWNSPARYP  1080
VEIKKEKKKG KPYWVPFVCC TSIHQDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027164482.1	0.0	protein IWS1 homolog A isoform X1
TrEMBL	A0A068V3A2	0.0	A0A068V3A2_COFCA; Uncharacterized protein