PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc03_g12520

Common Name

GSCOC_T00015208001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1003aa MW: 109956 Da PI: 4.9383

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc03_g12520	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.2e-28	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF +++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ Cc03_g12520 598 AEKHVSLSVLQQYFCGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	583	669	IPR003035	RWP-RK domain
Pfam	PF02042	8.9E-25	602	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.17E-21	897	987	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-21	899	981	No hit	No description
PROSITE profile	PS51745	19.871	902	984	IPR000270	PB1 domain
SMART	SM00666	1.3E-20	902	984	IPR000270	PB1 domain
CDD	cd06407	1.03E-30	903	983	No hit	No description
Pfam	PF00564	7.9E-16	904	983	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD 60 QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGGEDKM IRQDLENRFH 120 VPMDTASEGV DLTGRNDKSC RQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG 180 GILAQVWIPI RDGNTYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF 240 ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ 300 PHFDLEMDSV CRALQAVNLR SAAPSRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL 360 TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDQSMEGFV HVCMEHYLEE 420 GQGIAGKALQ SNHPFFFPDV KDYHISEYPL VHHARKFNLN AAVAIRLRST YTGDDDYILE 480 FFLPVNMRGS SEQQLLLNNL SSTMQRICRS LRTVSDAELI GGDDIKVELP NRSVNNLPTT 540 ALPRNCSQQS LLNSNSSSSD HLFSGTSETK SSHKGDTASG EQAMAGPKRQ SEKKRSTAEK 600 HVSLSVLQQY FCGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLKKIQSVL 660 DSVQGVEGGL KFDPATGGLL AGGSVIQDFD TRKGMLCPVK SASLRNPDSL TQDTTSACQT 720 YCMDGENSVV KMEECDMDAI EVQNANMLSP NSRKEASKLQ SSTVVCCNDT KLAALDAGQS 780 QPASPWPYSG NASLDSYLKK SSDKEWCLNS DRQKLDKSDH QLISLSSSSL VVVDEIEAKM 840 KSDNGLDGDD GGLEYNQPTS SSMTDSSNGS GSMMNGSSSS SRNFGEQKHS KNESNFGDSS 900 SKLTAKATYK DDTIRFKFDP SAGCLQLYEE ISKRFNLQLG VFQLKYMDDE EEWVMLVSDA 960 DLQECLEILD FLGTRAVKFL VRDTPQTIGS SGSSNCYLTG GS*

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD  60
QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGGEDKM IRQDLENRFH  120
VPMDTASEGV DLTGRNDKSC RQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG  180
GILAQVWIPI RDGNTYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF  240
ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ  300
PHFDLEMDSV CRALQAVNLR SAAPSRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL  360
TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDQSMEGFV HVCMEHYLEE  420
GQGIAGKALQ SNHPFFFPDV KDYHISEYPL VHHARKFNLN AAVAIRLRST YTGDDDYILE  480
FFLPVNMRGS SEQQLLLNNL SSTMQRICRS LRTVSDAELI GGDDIKVELP NRSVNNLPTT  540
ALPRNCSQQS LLNSNSSSSD HLFSGTSETK SSHKGDTASG EQAMAGPKRQ SEKKRSTAEK  600
HVSLSVLQQY FCGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLKKIQSVL  660
DSVQGVEGGL KFDPATGGLL AGGSVIQDFD TRKGMLCPVK SASLRNPDSL TQDTTSACQT  720
YCMDGENSVV KMEECDMDAI EVQNANMLSP NSRKEASKLQ SSTVVCCNDT KLAALDAGQS  780
QPASPWPYSG NASLDSYLKK SSDKEWCLNS DRQKLDKSDH QLISLSSSSL VVVDEIEAKM  840
KSDNGLDGDD GGLEYNQPTS SSMTDSSNGS GSMMNGSSSS SRNFGEQKHS KNESNFGDSS  900
SKLTAKATYK DDTIRFKFDP SAGCLQLYEE ISKRFNLQLG VFQLKYMDDE EEWVMLVSDA  960
DLQECLEILD FLGTRAVKFL VRDTPQTIGS SGSSNCYLTG GS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027117574.1	0.0	protein NLP9-like
Refseq	XP_027117575.1	0.0	protein NLP9-like
Refseq	XP_027117576.1	0.0	protein NLP9-like
Refseq	XP_027117577.1	0.0	protein NLP9-like
Refseq	XP_027117578.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A068U4F8	0.0	A0A068U4F8_COFCA; Uncharacterized protein
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]