PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g12730
Common NameGSCOC_T00015164001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 216aa    MW: 23847.3 Da    PI: 6.6153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g12730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-14109187174
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+G + Fv+++++
  Cc03_g12730 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGGSTFVNSKNI 187
                  89****************************996555555..89***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.03E-23104188IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-25106193IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-12108199No hitNo description
SMARTSM010196.3E-7109210IPR003340B3 DNA binding domain
PfamPF023626.4E-13109189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MIAFMDSKDK VHETEKCLDS QLWHACVGSM VQMPPANSKV LYFPQGHAEH ACGNVDFGNC  60
PVIPAYTRCR VSAIKFMADS ETDEVFAKVQ LIPIEGNGAD FDEDGPTSFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGDTWK FRHIYRGTPR RHLLTTGGST  180
FVNSKNIVIW TIMVLFPIKI LTIIGLLFPT QSYVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-48818741236Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173104.11e-128auxin response factor 18-like
SwissprotQ653H73e-87ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A068U5G31e-161A0A068U5G3_COFCA; Uncharacterized protein
STRINGXP_008449245.11e-105(Cucumis melo)
STRINGXP_004143252.11e-105(Cucumis sativus)
STRINGXP_004156337.11e-105(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.15e-88auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]