PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g13820
Common NameGSCOC_T00031737001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 200aa    MW: 21180.9 Da    PI: 9.0577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g13820genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-081181027
                 GGTS--TTTTT-SS-SSS CS
      zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                 +rtG Ck+G++Ck+ H++
  Cc03_g13820  1 MRTGNCKFGASCKYQHPR 18
                 8***************96 PP
2zf-CCCH22.22.5e-073964227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 ++++C+++ +tG+ kyG +Ck++H++
  Cc03_g13820 39 GEKECSYYVKTGQSKYGVTCKYHHPQ 64
                 7899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.854119IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-6118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.8223765IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-53964IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRTGNCKFGA SCKYQHPRQG SGSQTPVTLN FFGYPLRPGE KECSYYVKTG QSKYGVTCKY  60
HHPQPAATEP APAIYPPVQS PSVQSSQQYV VVAGNWPVPR PTLLPGSYIP GTYGPMLLPP  120
AMVPLPAWTS YPTPVSLAAT ASTQPAVGAG HIYGISQLSP SAPAYTGQYL SIPPAAGPSG  180
SSQREHAFPE RPGQPECQY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116055.11e-112zinc finger CCCH domain-containing protein 32-like
SwissprotQ5NAW21e-61C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A068URF51e-138A0A068URF5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000583234e-91(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.37e-48C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]