PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g16300
Common NameGSCOC_T00002096001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 143aa    MW: 15394.8 Da    PI: 11.0523
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g16300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-152963135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 Cs C+tt TplWR gp g+k+L naCG++y kk++
  Cc03_g16300 29 CSDCHTTRTPLWRGGPAGPKSLYNACGIKYNKKRR 63
                 ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.662358IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-82382IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-92462No hitNo description
Gene3DG3DSA:3.30.50.105.9E-132863IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-92874No hitNo description
PfamPF003202.3E-132963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MIWLDWSKNA KRSSSSSPSA SSSKQLKSCS DCHTTRTPLW RGGPAGPKSL YNACGIKYNK  60
KRRELLGLDR GRNDKGKKKR KSSSGGNKSN EGGGVGQSLR MKLMALGGEM VLRRSGKLMG  120
KLREEEQAAI LLMALSCGSV YA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16080KRRELLGLDRGRNDKGKKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118810.12e-90GATA transcription factor 16-like
SwissprotQ9FJ107e-29GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A068VE211e-95A0A068VE21_COFCA; Uncharacterized protein
STRINGMigut.D00108.1.p6e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-23GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]