PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g00300
Common NameGSCOC_T00021634001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 251aa    MW: 27057 Da    PI: 8.7575
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g00300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16171207135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Cc04_g00300 171 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 207
                  *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.5962863IPR010399Tify domain
SMARTSM009791.0E-102863IPR010399Tify domain
PfamPF062005.7E-133362IPR010399Tify domain
PfamPF062034.8E-1695137IPR010402CCT domain
PROSITE profilePS5101713.20595137IPR010402CCT domain
PROSITE profilePS501149.236165213IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-13165218IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-12166215No hitNo description
Gene3DG3DSA:3.30.50.107.3E-16169212IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.35E-15170223No hitNo description
PfamPF003201.5E-14171207IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDADVSTDQA TLSDNHSALV PPGASGSITN DNNQLTLSFQ GQVYVFDSVS PEKVQAVLLL  60
LGGREVPLNV PTNPVSTHGN RGISSTPEKF NVPQRLASLI RFREKRKERN FDKKIRYTVR  120
KEVALRMQRN KGQFTSSKPS NDDAASAASS WDSNQNWGLD ASASQNQEIS CRHCGISEKS  180
TPMMRRGPEG PRTLCNACGL MWANKGTLRD LSKGGGVQGP NCSLNQSDEN GNFKADETVI  240
RVAGNGSDSS *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123490.10.0GATA transcription factor 28-like isoform X1
RefseqXP_027123491.10.0GATA transcription factor 28-like isoform X1
RefseqXP_027123492.10.0GATA transcription factor 28-like isoform X1
SwissprotQ8H1G01e-105GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A068TPA20.0A0A068TPA2_COFCA; Uncharacterized protein
STRINGXP_010696086.11e-125(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-96ZIM-LIKE 2