PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g00720
Common NameGSCOC_T00021696001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 375aa    MW: 39406.6 Da    PI: 6.3171
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g00720genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.49e-371222212102
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssgkaa 91 
                  a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++         + ss s++++++ g   
  Cc04_g00720 122 APPKRSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngalkiPTTSSTSMTATEGDG--- 216
                  56799***********************************************************8888844432222222222222222222222... PP

          TCP  92 ksaakskksqk 102
                         ++++
  Cc04_g00720 217 ------ARKRR 221
                  ......11111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-30127217IPR005333Transcription factor, TCP
PROSITE profilePS5136927.296128182IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLLRFLGDFF YIKVFAFSMA SVENSQNLEP DDDEVNNDAH DLLLGDPHHY TITAVGPAFE  60
QSPRVAAAVD PTPSPPPPPP PFLQSSDIVP MLKEEPADND VEGSIPVGLT PIHHLDKPML  120
LAPPKRSSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLERAEPAII  180
EATGTGTVPA IAVSVNGALK IPTTSSTSMT ATEGDGARKR RKRASTSEFY EVNDNSSFAP  240
VAPITPQGLV PVWTVGAHGA PGMVPTSVVP SGAFFMIPPT GATIAAAAAA AGAVPPRPSN  300
QPQLWAIPAA AATPVFGVSG RPISNFVATG SPTGATSAQV LRDFSLEVYD KRELQFMVGA  360
AAGAGNDQTP SSKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122589.10.0transcription factor TCP9-like isoform X1
SwissprotQ9LT898e-71TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A068TNK20.0A0A068TNK2_COFCA; Uncharacterized protein
STRINGXP_009780060.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.25e-73TCP family protein