PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g01370
Common NameGSCOC_T00021786001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 239aa    MW: 26155.6 Da    PI: 4.7571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g01370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-084272347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia +++ gRt++++k++w++ 
      Cc04_g01370  4 RWSLIAGRLP-GRTDNEIKNYWNTN 27
                     5*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.84132IPR017930Myb domain
SuperFamilySSF466898.16E-7334IPR009057Homeodomain-like
CDDcd001679.84E-7428No hitNo description
Gene3DG3DSA:1.10.10.601.6E-11428IPR009057Homeodomain-like
PfamPF002491.7E-6428IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSCRWSLIAG RLPGRTDNEI KNYWNTNLAK KYQSGERLAA SSSCTKRNPS STTLLHKLTS  60
SAHQPPNSEK REGSSTYVVR TKARRCTKVF FNADLQTPSA QQPGVLAVKS PVPSGADQAK  120
DDSNETRTTD NSEKVGPVPA SGGGTESPPT FSGEEGYSSG FMMDFEMDND FLSDFLNMEF  180
ERDFPEVVAQ GTDNNEANDF SFNCCPRALS HDDRNDHADL GSITDLLDTA VTWLHEVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125290.11e-171transcription factor MYB4-like isoform X1
RefseqXP_027125291.11e-171transcription factor MYB4-like isoform X1
TrEMBLA0A068TNQ31e-178A0A068TNQ3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-13MYB family protein