PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g01480
Common NameGSCOC_T00021802001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 358aa    MW: 39651.1 Da    PI: 8.8252
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g01480genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.82.8e-31200256158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep++VNaKQ+++I++RR++Rak+e+++kl +k+rkpylheSRh+hAl+R+RgsgGrF
  Cc04_g01480 200 DEPIFVNAKQFKAIMRRRESRAKQEAQNKL-SKNRKPYLHESRHRHALNRARGSGGRF 256
                  79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-35198259IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.44199259IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-27201256IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.3E-21202224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.3E-21233256IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPDSITTAAT TSSIFTKSQR MQDLLKGDDL NNARMMAPCV DDSQSWWTST NSQGQQSSLS  60
RNLTFKAASP VECFQGNKQL GFHFQDQESS STQSTGQSCP EVASMENEKY RKNITSVQPG  120
WCGLHAKPEE DPSKSSVLFQ DYIFPCSSID YRQHATYPFN YTDPYNHGLV AAYGPHSVVH  180
SQMMGMTPIR VPLPLDAAQD EPIFVNAKQF KAIMRRRESR AKQEAQNKLS KNRKPYLHES  240
RHRHALNRAR GSGGRFLNTK ELQESKAVAK TNDKETSGSL RLQLNMETTE PEVCQTGNKK  300
DGISITACSD ITSASNGDDA LQRQDFRFSG YRPHVGSFVA SGGSGRTGGV QQFLSIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18200261263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167416.10.0nuclear transcription factor Y subunit A-6
TrEMBLA0A068TPA30.0A0A068TPA3_COFCA; Uncharacterized protein
STRINGXP_004303671.12e-83(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-52nuclear factor Y, subunit A3