PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g02580
Common NameGSCOC_T00021931001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 371aa    MW: 39992.6 Da    PI: 6.9548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g02580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13113157347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky
      Cc04_g02580 113 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVTSRTPTQVASHAQKY 157
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.107.6E-4223IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.929106162IPR017930Myb domain
SuperFamilySSF466892.39E-17108163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-18109161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-11110156IPR009057Homeodomain-like
SMARTSM007172.6E-11110160IPR001005SANT/Myb domain
PfamPF002495.8E-11113157IPR001005SANT/Myb domain
CDDcd001671.53E-9113158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGGGSGGC AGGGVKLFGV RLTDGSIMKK SASMGNLSHY  60
HSSSSAAASP NRSSPSSDPF HDPVHLPDGY LSDDPNDASC SANRRAERKK GVPWTEEEHR  120
LFLLGLQKLG KGDWRGISRN FVTSRTPTQV ASHAQKYFIR QSNANRRKRR SSLFDMVPDM  180
STDPLAPPEE QFVLPPQVVD SSKEQLASPH PLAIGDDNEK SLPSLDLSLK QEYEPMEATL  240
SEVVEETEEN VKSPPEIPSL FPSFFPAFIP ISYPLWPSNI APQEEGRGAE ASHHQILKPI  300
PVIPKEPVNV DELVGMSQLS LGGTSSGLVE SSRLSLKLTG EPSRQSAFHA STPIKGSGIT  360
KDENSSFQAV *
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126029.10.0transcription factor MYBS3
SwissprotQ7XC572e-98MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A068TPK60.0A0A068TPK6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000679941e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-71MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]