PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g03010

Common Name

GSCOC_T00021986001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

CPP

Protein Properties

Length: 152aa MW: 17327.2 Da PI: 8.3318

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g03010	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	39.9	8.3e-13	33	72	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+Ck+s+C+k+YC Cfa+ k+C+ C+C++C+N+ e+ Cc04_g03010 33 KEKHCKCKQSSCVKMYCLCFASSKYCDG-CNCSNCQNTFEN 72 689***********************.******9875 PP
2	TCR	39.4	1.2e-12	111	146	5	40
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 gC Ck+s+C++ YCeC+ a+ Cs++CkC++CkN++ Cc04_g03010 111 GCCCKRSRCIQGYCECYRANIICSKNCKCKNCKNSR 146 8*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	9.9E-13	32	72	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	27.298	33	147	IPR005172	CRC domain
Pfam	PF03638	2.8E-9	35	69	IPR005172	CRC domain
SMART	SM01114	2.6E-6	111	148	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-9	111	145	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MLNLKPYLCS LQLKPSPKIE FDDFKLRGEI PAKEKHCKCK QSSCVKMYCL CFASSKYCDG 60 CNCSNCQNTF ENEEVRQASI GLILQRNQKA FRTMVVSSPE CSQDSEVMYI GCCCKRSRCI 120 QGYCECYRAN IICSKNCKCK NCKNSRAYEE M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	35	144	12	120	Protein lin-54 homolog
5fd3_B	1e-17	35	144	12	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027168102.1	3e-63	protein tesmin/TSO1-like CXC 6
Swissprot	Q9SZD1	7e-35	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A068TNV6	1e-104	A0A068TNV6_COFCA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25790.1	5e-29	Tesmin/TSO1-like CXC domain-containing protein