PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g03030
Common NameGSCOC_T00021990001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 766aa    MW: 84415.5 Da    PI: 6.6448
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g03030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.8e-21111166156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Cc04_g03030 111 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 166
                  7999************************************************9877 PP
2START218.62.1e-682835053206
                  HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                   ++a++el ++a++++p+W +s     e++n+de+++kf+ +++      +++ea+r++g+v+ +l+ lv+ ++d++ qW+e+++    ka+t++v++
  Cc04_g03030 283 VNQALEELKQMATLGQPLWIRSLesgrEILNYDEYMKKFPFENAknagpkRPIEASRETGIVFVELPPLVQCFMDVN-QWKEMFPgrvsKAATVDVVC 379
                  678999*********************************9888899*******************************.******************** PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                  +g      g +qlm+aelq+l+p+vp R+++fvRy++q +a++w+ivdvS+d  ++   ++s+ +++++pSg++ie+ksngh+kvtwveh +++++++
  Cc04_g03030 380 TGeganrdGLVQLMFAELQMLTPMVPtREVYFVRYSKQITADQWAIVDVSIDKVEDSV-DASLTKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSTV 476
                  ********************************************************99.9************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 178 hwllrslvksglaegaktwvatlqrqcek 206
                  h+l+r +v+sgla+ga++w+ tlq qce+
  Cc04_g03030 477 HSLYRAVVNSGLAFGARHWMTTLQLQCER 505
                  ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2397162IPR009057Homeodomain-like
SuperFamilySSF466893.63E-2199169IPR009057Homeodomain-like
PROSITE profilePS5007118.091108168IPR001356Homeobox domain
SMARTSM003893.2E-19110172IPR001356Homeobox domain
PfamPF000468.8E-19111166IPR001356Homeobox domain
CDDcd000863.31E-17115166No hitNo description
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PROSITE profilePS5084836.929272508IPR002913START domain
SuperFamilySSF559611.79E-30276506No hitNo description
CDDcd088754.35E-107276504No hitNo description
SMARTSM002345.2E-65281505IPR002913START domain
PfamPF018528.9E-54282505IPR002913START domain
Gene3DG3DSA:3.30.530.205.5E-4335499IPR023393START-like domain
SuperFamilySSF559611.79E-12548727No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MGVLDMSNPP PTSQTKDFFP SPALSLSLAG IFRRGAAAAN LEVEEGDEGS GGGGAAAASA  60
GGGGRREETV EISSENSGPL RSRSDDMDDY EGEGEQDDGG EDDQNNKKKK RKKYHRHTAE  120
QIREMEALFK ESPHPDEKQR QQLSKQLGLH PRQVKFWFQN RRTQIKAIQE RHENGLLKTE  180
LEKLRDENKA LRETIKKASC PSCGFATSAK GPSTASDEQQ LRIENARLKA EVEKLRAALG  240
RYTPGTSPSD SSCSAGNEFE NRSCLEFYSG IFGLKKSRIM EIVNQALEEL KQMATLGQPL  300
WIRSLESGRE ILNYDEYMKK FPFENAKNAG PKRPIEASRE TGIVFVELPP LVQCFMDVNQ  360
WKEMFPGRVS KAATVDVVCT GEGANRDGLV QLMFAELQML TPMVPTREVY FVRYSKQITA  420
DQWAIVDVSI DKVEDSVDAS LTKCRKRPSG CIIEDKSNGH CKVTWVEHLE CQKSTVHSLY  480
RAVVNSGLAF GARHWMTTLQ LQCERLAFFM ATNVPTKDSS GVATLAGRKS ILKLAHRMTV  540
SFCRALGASS YNTWSKITSK SGDDIRVASR KNLNDPGEPL GVILCAVSSV WLPVSHHDLF  600
DFLRDESRRN EWDMMLNGAP AQSIANLAKG QDRGNAVTIQ TIKTKDNSMW VLQDSCTNAY  660
ESMVVYAPVD ISSMQSVMTG CDSSNIAVLP SGFSILLDGV ESRPLVITSR LEEKSSEGGS  720
LLTIAFQILT SNSPTAKPSV ESLESVNTLI SCTLQKIKAS LNCED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KKKKRK
2106112KKKKRKK
3108112KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125787.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A068TPQ70.0A0A068TPQ7_COFCA; Uncharacterized protein
STRINGVIT_09s0002g04340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]