PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g05340
Common NameGSCOC_T00022284001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 214aa    MW: 24570.4 Da    PI: 10.5814
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g05340genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-1657116155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Cc04_g05340  57 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 116
                  78*******************999955656446*************************98 PP
2AP229.51.9e-09159193138
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t
  Cc04_g05340 159 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYVT 193
                  89****99**********99966...3.6********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1757126IPR016177DNA-binding domain
PfamPF008472.6E-1257116IPR001471AP2/ERF domain
SMARTSM003802.1E-2558130IPR001471AP2/ERF domain
PROSITE profilePS5103220.33658124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1758125IPR001471AP2/ERF domain
PRINTSPR003674.8E-65970IPR001471AP2/ERF domain
PRINTSPR003674.8E-6106126IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-6159195IPR016177DNA-binding domain
PfamPF008472.5E-5159192IPR001471AP2/ERF domain
SMARTSM003800.024160202IPR001471AP2/ERF domain
PROSITE profilePS510328.953160193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-5160195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAKSSKQKTS STTTTTTTSI DADNNNSSNS TTPVVKTTKT KRTRKSVPRD SPQQRSSVYR  60
GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI  120
LNFPLSTYGN ELSEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV  180
FGNKYLYLGT YVTPMHVMQL HKKKQRLHMT WQQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121550.11e-141AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_027122727.11e-141AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_027124636.11e-141AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN47e-88AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A068TSE11e-158A0A068TSE1_COFCA; Uncharacterized protein
STRINGGorai.009G008800.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-79ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]