PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g06620
Common NameGSCOC_T00022453001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 1396aa    MW: 155804 Da    PI: 6.4367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g06620genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.8e-10420463346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT  Ed+ l+++v+q G  +W  Ia  mg++Rt+ qc  r+q 
      Cc04_g06620 420 SWTSTEDKNLLHVVQQKGLSNWIDIAVSMGTNRTPFQCLARYQR 463
                      7*****************************************96 PP
2Myb_DNA-binding40.27.8e-13472515246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        WT+eEd +l  av+ +G  +W  +a+ m  gR + qc +rw k
      Cc04_g06620 472 REWTEEEDNQLRAAVEAFGESNWQVVASAME-GRIGTQCSNRWMK 515
                      68*****************************.***********98 PP
3Myb_DNA-binding591e-18525569247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+WT+eEd++l+ av ++G++tWk+Iar ++ gRt  qc++rw + 
      Cc04_g06620 525 GKWTPEEDKRLKVAVMLFGPKTWKKIARFVP-GRTQVQCRERWVNC 569
                      79*****************************.***********986 PP
4Myb_DNA-binding48.12.8e-15576621148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r+ WT+eEd +l+ a++++G   W+++a++++  Rt+ qc+ rw  +l
      Cc04_g06620 576 RNDWTQEEDSKLKAAIEEHGYC-WSKVAACVP-PRTDSQCRRRWKVLL 621
                      789*****************99.*********.9**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.5E-5317414IPR001005SANT/Myb domain
PROSITE profilePS500906.632318410IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.1E-12320336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-12385425IPR009057Homeodomain-like
SuperFamilySSF466899.94E-16394461IPR009057Homeodomain-like
PROSITE profilePS500909.117413465IPR017877Myb-like domain
SMARTSM007171.8E-6417467IPR001005SANT/Myb domain
PfamPF002491.9E-8419463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-14426477IPR009057Homeodomain-like
SuperFamilySSF466895.66E-19448519IPR009057Homeodomain-like
PROSITE profilePS5129419.957466521IPR017930Myb domain
SMARTSM007172.8E-13470519IPR001005SANT/Myb domain
PfamPF002491.8E-11472515IPR001005SANT/Myb domain
CDDcd001672.57E-10473517No hitNo description
Gene3DG3DSA:1.10.10.603.3E-16478520IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-21521573IPR009057Homeodomain-like
PROSITE profilePS5129415.143522570IPR017930Myb domain
SuperFamilySSF466892.16E-27522617IPR009057Homeodomain-like
SMARTSM007171.5E-15523572IPR001005SANT/Myb domain
PfamPF002497.7E-17525569IPR001005SANT/Myb domain
CDDcd001673.85E-13526568No hitNo description
PROSITE profilePS5129424.217571625IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-19574623IPR009057Homeodomain-like
SMARTSM007173.2E-15575623IPR001005SANT/Myb domain
PfamPF002491.4E-13576621IPR001005SANT/Myb domain
CDDcd001676.79E-13579621No hitNo description
SMARTSM003201.8E-410701110IPR001680WD40 repeat
SuperFamilySSF509788.96E-7410721392IPR017986WD40-repeat-containing domain
CDDcd002003.66E-8910731390No hitNo description
Gene3DG3DSA:2.130.10.101.4E-7910741391IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.1510751110IPR001680WD40 repeat
PROSITE profilePS5029452.33410771395IPR017986WD40-repeat-containing domain
PROSITE profilePS5008210.27510771119IPR001680WD40 repeat
SMARTSM003201.7E-611181157IPR001680WD40 repeat
PfamPF004002.1E-611211157IPR001680WD40 repeat
PROSITE profilePS5008215.62111251166IPR001680WD40 repeat
PROSITE patternPS00678011441158IPR019775WD40 repeat, conserved site
SMARTSM003203.2E-911601199IPR001680WD40 repeat
PfamPF004003.9E-611651199IPR001680WD40 repeat
PROSITE profilePS5008214.71911671199IPR001680WD40 repeat
PRINTSPR003202.9E-711861200IPR020472G-protein beta WD-40 repeat
PROSITE patternPS00678011861200IPR019775WD40 repeat, conserved site
SMARTSM003205.8E-1012011245IPR001680WD40 repeat
PfamPF004009.5E-712041245IPR001680WD40 repeat
PROSITE profilePS5008214.38512111254IPR001680WD40 repeat
PRINTSPR003202.9E-712321246IPR020472G-protein beta WD-40 repeat
PROSITE patternPS00678012321246IPR019775WD40 repeat, conserved site
SMARTSM003207.0E-1012481287IPR001680WD40 repeat
PfamPF004001.7E-512531287IPR001680WD40 repeat
PROSITE profilePS5008215.72212551296IPR001680WD40 repeat
PRINTSPR003202.9E-712741288IPR020472G-protein beta WD-40 repeat
PROSITE patternPS00678012741288IPR019775WD40 repeat, conserved site
SMARTSM003200.112901327IPR001680WD40 repeat
PfamPF004000.01112931327IPR001680WD40 repeat
SMARTSM003200.03913501391IPR001680WD40 repeat
PfamPF004000.005513581390IPR001680WD40 repeat
PROSITE profilePS5008210.30813671395IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1396 aa     Download sequence    Send to blast
MSLNDDEEEE SSGSDADDGF DEDMEALRRA CLLTGTNVDD LENPCSPSPA VTATTSGAAA  60
TTGSDSDADD AEDDLELVRN IQKRFAIVTD NALEPLTLEP LYSIQPSANE DDDFETLRAI  120
QRRFFAYSEG GLGESTEVVS HKPENSNLQE ESPSYLDKIN NATKDIEACS KVNAGTQPSD  180
FSEWHDSDSV NAAILPVKGS SFPKAAEAFV DAIKKNRSCQ KLIRSKLLHI ETRIEELKKL  240
KERVKILKDF QATCRKRVGQ ALSQKKDARV QLISVPKLSA NVQLSQKKSS PMQYGPAENS  300
QVANYREVLE KFPVSVIRNK WSKEEREKLS NGVKQQFQKV LLQRSVDLLS DGDGSFDDSD  360
NLDSIVASIR DLDITPDKMR QFLPKVNWDE LASMYLPGRS GAECQARWLN CEDPLINQNS  420
WTSTEDKNLL HVVQQKGLSN WIDIAVSMGT NRTPFQCLAR YQRSLNASII KREWTEEEDN  480
QLRAAVEAFG ESNWQVVASA MEGRIGTQCS NRWMKSLHPA RQRVGKWTPE EDKRLKVAVM  540
LFGPKTWKKI ARFVPGRTQV QCRERWVNCL DPSLNRNDWT QEEDSKLKAA IEEHGYCWSK  600
VAACVPPRTD SQCRRRWKVL LPHEVPWLQA AKKMQRAALI SNFVDRESER PGLLPSDFVP  660
LPEITCTSES ERINLSGHQN WGLSDLGSEE VLASGTEVER FTSDSISRRK RQRRKSRRTN  720
SIASSEEHLS YCPDTMHSSE TMHSNDLETL GGFNHCQNRS SQKSKGMASG YKCTSKKRAR  780
RTHPKRDGCS DSVDRISSSN NVNSLIMTGG EETRELVRDD GSGTQCKQDF DQHPSYSRCN  840
KSLEENGGCN DTEGHQLSFD NPNLLLIENG EEAVEVNRSD GVATLGQKAS KLHPRRSGHN  900
ESPDGIPGIS FPNTAEFDVV HDTVVNKQRS ETKSTPEKSE STNAVDHHSS SLLNSTVKKD  960
LGTSGVIGSK RGKRTRNRDE TSVVEETEND DMTLAEFCNK RLAAENTGDD DMTLAICITV  1020
LIFLESKKFR VTPGFFYLSF HYIFSIFRLS PPKNPAPHSR SSSLKMSQDQ LILRGTMRAH  1080
TDWVTAIATP IDNTDMIVTS SRDKSIILWS LTKEDKTYGV PRRRLTGHSH FVQDVVLSSD  1140
GQFALSGSWD GELRLWDLQS GTTARRFVGH TKDVLSVAFS IDNRQIVSAS RDKTIKLWNT  1200
LGECKYTIQD ADGHTDWVSC VRFSPNNLQP TIVSGSWDRT VKIWNLSNCK MRATLAGHTG  1260
YVNTAAVSPD GSLCASGGKD GVILLWDLAE GKKLYSLDAG SIIHALCFSP NRYWLCAATE  1320
ASIKIWDLES KSIVVDLRVD LKQESEMAAE GTTVQTTGAK NKVIYCTSLN WSADGSTLFS  1380
GYTDGVIRVW GIMRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3dm0_A0.010711395372694Maltose-binding periplasmic protein fused with RACK1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1707717RRKRQRRKSRR
2709717KRQRRKSRR
3711717QRRKSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027124761.10.0uncharacterized protein LOC113741432
TrEMBLA0A068TQ560.0A0A068TQ56_COFCA; Uncharacterized protein
STRINGMigut.D01451.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1