PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g07710
Common NameGSCOC_T00022605001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 162aa    MW: 17955.3 Da    PI: 4.3816
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g07710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB78.96.8e-2511102394
        NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c +e+++ti+++ +l al  lGf dy+e++++  +++r+  
  Cc04_g07710  11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSKEEKRTIAPEHVLKALEVLGFGDYIEEVHAAYEQHRNET 102
                  6899*****************************************************************************99999988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-409138IPR009072Histone-fold
SuperFamilySSF471133.22E-3612142IPR009072Histone-fold
PfamPF008087.2E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE  60
VCSKEEKRTI APEHVLKALE VLGFGDYIEE VHAAYEQHRN ETMDTVRAGK WSNGAEMTEE  120
EALAEQQRMF AEARARMNGG AIVPPTVPKQ PDSEPEPSLN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-361213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-31HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-31HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121514.11e-116protein Dr1 homolog
SwissprotP495924e-88NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A068TQ891e-115A0A068TQ89_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000104367e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.43e-92nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]