PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g07770
Common NameGSCOC_T00022613001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 232aa    MW: 25975.3 Da    PI: 10.5246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g07770genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1760108355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + GVr+++ +grWvAeI+d s   ++ r +lg+f+taeeAa a+++a++ l+g
  Cc04_g07770  60 FLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDTAEEAALAYDNAARLLRG 108
                  67******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.98159116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2859116IPR001471AP2/ERF domain
CDDcd000181.87E-3059115No hitNo description
SMARTSM003805.5E-3459122IPR001471AP2/ERF domain
PRINTSPR003677.1E-86071IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2060117IPR016177DNA-binding domain
PfamPF008471.5E-1162108IPR001471AP2/ERF domain
PRINTSPR003677.1E-88298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDGSMDAQSS KVQSQSQDPF RSLPLLPMMA TATPPESIEV QVDMESPRRE NITIHGRRRF  60
LGVRQRPSGR WVAEIKDSSQ KLRLWLGTFD TAEEAALAYD NAARLLRGRN AKTNFTYNGT  120
MDTREENLSL LGKNPRLYQL LKHAIMKNLA KSSALDSSKS TRNFTDQSSQ EKRELRRISL  180
GSSKVYSSVI VAPSFSASLS QGREEPENNS RGALFNSLFY QTNVMSHNKL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14551231279Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121343.11e-154ethylene-responsive transcription factor ERN3-like
TrEMBLA0A068TQF51e-169A0A068TQF5_COFCA; Uncharacterized protein
STRINGXP_009617997.15e-62(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-16related to AP2 11