PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g07990

Common Name

GSCOC_T00022644001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 779aa MW: 87469.1 Da PI: 5.5546

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g07990	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.6	1.2e-18	577	621	3	47
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 ++++ e+++k+F+l++kdAAk L+v+ ++LKr+CR+++I+RWP+R Cc04_g07990 577 DKLDRETIEKHFHLTLKDAAKGLKVSRSTLKRKCRKFNISRWPRR 621 57899***************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.174	561	647	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	5.4E-4	574	615	IPR009057	Homeodomain-like
Pfam	PF02042	5.0E-18	579	622	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.78E-9	674	745	No hit	No description
SMART	SM00666	1.0E-4	677	760	IPR000270	PB1 domain
PROSITE profile	PS51745	12.513	677	754	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.6E-8	679	741	No hit	No description
Pfam	PF00564	8.6E-8	679	745	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MAEVRTRCPN DVEDIDGTFS KSKFLDYIGT KLHTSVSTSR KSLCVFWDEE DDESDSYQTL 60 FSQVGPPLLP PPIVKDKIKI ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC 120 LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD DVDVDVDRNG GGGVRESVLL TGPPSRVFLR 180 GLPEYSPNVE FYADSEYALR DKAMGRKISD YMAVPVFDPN SRECIGVIEL LSTADSVREK 240 DNPAYIFGLI STALQGVELR TLNFTSDFES DLAKSSTDIS HALCDIHKAL DEACQTHKLP 300 FAQTWMPQLG KSQSCTDNAL STTSNEYYLG HARLSLFRDI CESFQLLGGQ GVVWRAFSSG 360 IPCFCVDITK LSIAEYSFAH IGKKVLLDSS LAICLKSDHT GDHVYVLELF LPSRTADPRK 420 LLEAVLLTMK KHLNSFRLAS GPTLGDEMSV EVLRVSKEDK LDLFTLFHTT GGSDGLQNQQ 480 PFRYWEFSIG DYANLVNELP CWEQAYDDLR WMEDYRDTPS VKAGNSNINS SVSTSTYPEQ 540 DNLESLVAED AGFNAPLSRD VDFSVNKESI NSASDLDKLD RETIEKHFHL TLKDAAKGLK 600 VSRSTLKRKC RKFNISRWPR RNQGTCSATS IESNKDREIP NAKYGQEVSH HNVSFQEGTN 660 SSKHNSLPAA TIAKDSFMMI KAAYGEIKKI KFPLPFSSPL VDLQMEAASR LELEVRDFKL 720 WYLDEDDDWI LITRDADLRT MESILILMGQ LHWHQLVPIS VPNRSLMTRV AALFRDVV*

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MAEVRTRCPN DVEDIDGTFS KSKFLDYIGT KLHTSVSTSR KSLCVFWDEE DDESDSYQTL  60
FSQVGPPLLP PPIVKDKIKI ALQHVDLLYN RAMLAQFWVP VMIGGRRFLK SSDQPFGLTC  120
LRKGLCSYRK LCLNYYYCTD NTCSSDGGAD DVDVDVDRNG GGGVRESVLL TGPPSRVFLR  180
GLPEYSPNVE FYADSEYALR DKAMGRKISD YMAVPVFDPN SRECIGVIEL LSTADSVREK  240
DNPAYIFGLI STALQGVELR TLNFTSDFES DLAKSSTDIS HALCDIHKAL DEACQTHKLP  300
FAQTWMPQLG KSQSCTDNAL STTSNEYYLG HARLSLFRDI CESFQLLGGQ GVVWRAFSSG  360
IPCFCVDITK LSIAEYSFAH IGKKVLLDSS LAICLKSDHT GDHVYVLELF LPSRTADPRK  420
LLEAVLLTMK KHLNSFRLAS GPTLGDEMSV EVLRVSKEDK LDLFTLFHTT GGSDGLQNQQ  480
PFRYWEFSIG DYANLVNELP CWEQAYDDLR WMEDYRDTPS VKAGNSNINS SVSTSTYPEQ  540
DNLESLVAED AGFNAPLSRD VDFSVNKESI NSASDLDKLD RETIEKHFHL TLKDAAKGLK  600
VSRSTLKRKC RKFNISRWPR RNQGTCSATS IESNKDREIP NAKYGQEVSH HNVSFQEGTN  660
SSKHNSLPAA TIAKDSFMMI KAAYGEIKKI KFPLPFSSPL VDLQMEAASR LELEVRDFKL  720
WYLDEDDDWI LITRDADLRT MESILILMGQ LHWHQLVPIS VPNRSLMTRV AALFRDVV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027122522.1	0.0	protein NLP7-like
TrEMBL	A0A068TT39	0.0	A0A068TT39_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13879	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-60	NIN like protein 7