PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g09150

Common Name

GSCOC_T00022796001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

BBR-BPC

Protein Properties

Length: 309aa MW: 33862.5 Da PI: 10.3695

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g09150	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	310.3	6.4e-95	1	308	1	301
GAGA_bind 1 mdddgsre.rnkgyyepa..aslk..enlglqlmssiaerdaki..rern.lalsekkaavaerd..........................maflqrd 64 md +gs++ rn+g++ep+ ++lk +lglqlms+++e+ re++ +++++a+ m++ +rd Cc04_g09150 1 MDGNGSMNlRNWGFFEPTptPALKgaGHLGLQLMSTMTEKPLFGggRENHpYQHHHPHQAY---SsimapstnggpyhhhrvggisessipMDY-MRD 94 999***********776677773369*****988765555333212233344444...223344455554444445666666666666.666 PP GAGA_bind 65 kalaernkalverdnkllalllvensla.salpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160 l+ + +++++ ++ ++ +++vl++t+s++s+q++++ + l+++ v+ +ee +i e++ ++ +kk+ +k+pk Cc04_g09150 95 LQLHPQ--------------QQNQHHSQhHHPQINYGVLPETSSAHSVQMIQQsSLLNNDDVGPQEE------EICETRGVVGAVKKRG---GGKVPK 169 666663..............33333333134446799*********77724455555553333......4555555555555544...678888 PP GAGA_bind 161 ekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258 ++kakk+kk ++ ++++++++ +r++a+kks ++ +ng+s+D+s++P+PvC+CtG +qCY+WG+GGWqSaCCtt +SvyPLP+s+krrgaRiagr Cc04_g09150 170 SPKAKKPKKAPKPPREESSRSL--HRARAPKKSAEVIINGISMDISGIPIPVCTCTGNAQQCYRWGAGGWQSACCTTGMSVYPLPMSAKRRGARIAGR 265 8888888886666655555555..79******************************************************************** PP GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 KmS gaf+k+LekLa+eG+++snp+DL++hWAkHGtnkfvtir Cc04_g09150 266 KMSLGAFRKVLEKLASEGFNFSNPIDLRNHWAKHGTNKFVTIR 308 ****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.8E-140	1	308	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.5E-100	1	308	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDGNGSMNLR NWGFFEPTPT PALKGAGHLG LQLMSTMTEK PLFGGGRENH PYQHHHPHQA 60 YSSIMAPSTN GGPYHHHRVG GISESSIPMD YMRDLQLHPQ QQNQHHSQHH HPQINYGVLP 120 ETSSAHSVQM IQQSSLLNND DVGPQEEEIC ETRGVVGAVK KRGGGKVPKS PKAKKPKKAP 180 KPPREESSRS LHRARAPKKS AEVIINGISM DISGIPIPVC TCTGNAQQCY RWGAGGWQSA 240 CCTTGMSVYP LPMSAKRRGA RIAGRKMSLG AFRKVLEKLA SEGFNFSNPI DLRNHWAKHG 300 TNKFVTIR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126784.1	0.0	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A068TRR3	0.0	A0A068TRR3_COFCA; Uncharacterized protein
STRING	XP_009761371.1	1e-118	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-67	basic pentacysteine 2