PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g09180
Common NameGSCOC_T00022799001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 179aa    MW: 19638.7 Da    PI: 8.1273
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g09180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.17.6e-27858457
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                   Y+eC++NhAa+lG +a+DGCgEf+ +   ++++ +l CaACgCHRnFHR+ +
  Cc04_g09180  8 EFYRECQRNHAANLGNYATDGCGEFLLD---QTSPGTLLCAACGCHRNFHRKLT 58
                 67*************************8...6789****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.3E-23957IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-151056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.061057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.3E-231056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.9E-2893163IPR009057Homeodomain-like
SuperFamilySSF466894.78E-1697162IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-28104162IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEGENANEFY RECQRNHAAN LGNYATDGCG EFLLDQTSPG TLLCAACGCH RNFHRKLTYG  60
ANYNRGSNSN QETATEMMEY SGGGDGGSGG GQQAAESPDR MSSKKRLRTK FTPDQKEKML  120
AFAEKLGWKL QRKDMEDEVE RFCSSIGVNR KVFKVWMHNH KNSSSASTSA GNASSLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-221031671679ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125216.11e-131zinc-finger homeodomain protein 10-like
RefseqXP_027125217.11e-131zinc-finger homeodomain protein 10-like
SwissprotA2XLF42e-40ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV52e-40ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A068TRK51e-131A0A068TRK5_COFCA; Uncharacterized protein
STRINGXP_004137520.15e-74(Cucumis sativus)
STRINGXP_004174113.15e-74(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-40homeobox protein 22