PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g09840
Common NameGSCOC_T00042515001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 251aa    MW: 28231 Da    PI: 8.7261
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g09840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.53.9e-47141381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++++k++PwdLp  +   e++ yfFs+++ ky++g+r+nrat++gyWkatg dk+++s+ ++
  Cc04_g09840  14 LPPGFRFQPTDEEIVFQYLLRKTFSCPLPA-SIIPEINVCKHDPWDLPGDL---EQDRYFFSNKEAKYPNGNRTNRATDTGYWKATGVDKQIVSSrRK 107
                  79****************************.89***************543...5689***********************************98455 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   l gl+ktLvf+kg++p+g++tdW+mheyrl
  Cc04_g09840 108 PLLGLRKTLVFHKGKSPHGSRTDWIMHEYRL 138
                  669**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-5511173IPR003441NAC domain
PROSITE profilePS5100552.50914173IPR003441NAC domain
PfamPF023654.2E-2415138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGCLKFVKDG VIRLPPGFRF QPTDEEIVFQ YLLRKTFSCP LPASIIPEIN VCKHDPWDLP  60
GDLEQDRYFF SNKEAKYPNG NRTNRATDTG YWKATGVDKQ IVSSRRKPLL GLRKTLVFHK  120
GKSPHGSRTD WIMHEYRLIL TGKTACCSQQ TAKSSQSSSV QLGNWVLCHI FLKKGSTKAV  180
DETVQVCKNY KNIAEQNVRM DQHRFENFTI GNLSEVASTS SSSSFFSDPS VLTEVSSSQC  240
DYEETSSPIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-471217413169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121825.10.0NAC domain-containing protein 83-like
SwissprotQ9FY935e-79NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A068V2V00.0A0A068V2V0_COFCA; Uncharacterized protein
STRINGXP_009597132.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-79NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]