PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g10450
Common NameGSCOC_T00042595001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 281aa    MW: 32223 Da    PI: 9.1358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g10450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043115138123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C++C+k F+   +L +H  + H
  Cc04_g10450 115 WRCGYCKKIFRAEKYLDQHFDNrH 138
                  58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVYTNNERIT HLVIPFIYLL MLSGLSSVSS AFSQPNLQGT DNPGSRTLKQ EDPPVHEVHC  60
SRERSRAAWN IIDQYLMPFV EKEKYQLSSQ CRLNASNDLF RDQEEHKIHY DANEWRCGYC  120
KKIFRAEKYL DQHFDNRHSN LLNSNGKCLA DVCGALHCDL MMDSKPRKSK CNPAAAAKNR  180
HLCESLADSC FPVNQGHSAT RLHDLFLRQF CDAHTCSGGK KPFSRGGRKH TNVFYLAISI  240
LTMMLLPIFY LIVYLYQREM RKGTQELKRI SKIGQKTKPS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123000.10.0uncharacterized protein LOC113739838
TrEMBLA0A068V3A70.0A0A068V3A7_COFCA; Uncharacterized protein
STRINGXP_009616977.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80841216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-111C2H2-like zinc finger protein