PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g10620
Common NameGSCOC_T00042622001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 1282aa    MW: 141448 Da    PI: 8.5649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g10620genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002911901212323
                   ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                   Cp   Cgk F ++ +L++H r+H
  Cc04_g10620 1190 CPvkGCGKKFFSHKYLVQHRRVH 1212
                   9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.0E-132667IPR003349JmjN domain
PROSITE profilePS5118313.4252768IPR003349JmjN domain
PfamPF023751.8E-142861IPR003349JmjN domain
SMARTSM005582.2E-50193362IPR003347JmjC domain
PROSITE profilePS5118433.102196362IPR003347JmjC domain
SuperFamilySSF511978.79E-25208360No hitNo description
PfamPF023732.9E-36226345IPR003347JmjC domain
SMARTSM003552311651187IPR015880Zinc finger, C2H2-like
SMARTSM003550.004511881212IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.96511881217IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-611901216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011901212IPR007087Zinc finger, C2H2
SuperFamilySSF576678.35E-1012041246No hitNo description
Gene3DG3DSA:3.30.160.607.0E-912171242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001612181242IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82412181247IPR007087Zinc finger, C2H2
PROSITE patternPS00028012201242IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-812361270No hitNo description
Gene3DG3DSA:3.30.160.603.2E-912431271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8312481274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.65812481279IPR007087Zinc finger, C2H2
PROSITE patternPS00028012501274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1282 aa     Download sequence    Send to blast
MASEASSTPV ASGNIEVFSW LKTLPVAPEY HPTLAEFQDP IAYIFKIEKE ASQYGICKIV  60
PPVPAPHKKT AVSNLNKSLV ARSGSPTFTT RQQQIGFCPR KQRPVQKPVW QSGENYTLEE  120
FEAKAKAFER NYLKKSRKKC LIPLEIETLY WKAIVDKPFS VEYANDMPGS AFAPRRGGKE  180
GGGEGSNVNA NVTVGDTEWN MRGVSRAKGS LLTFMKEEIP GVTSPMVYVA MMFSWFAWHV  240
EDHDLHSLNY LHTGAGKTWY GVPWDAAAAF EEVIRVHGYG GEINPLVTFS TLGEKTTVMS  300
PEVLIDAGVP CCRLVQNAGE FVVTFPRAYH SGFSHGFNCG EAANIATPGW LTVAKDAAIR  360
RASINCPPMV SHFQLLYDLA LSSCSRVPRG VRMEPRSSRL KDKKKGEGEM LVKDLFVQDV  420
MQNNDLLYML AEGSSVVILP QNSVVSSFSS NSKAGSQSQV QPGLFPSLGS PDLMMKTTKS  480
LLSEGIVQER KRGVLQGTGS CSMKETVSPS CFDKRVPCSV RGNEFSALAS ESKNMETEKG  540
RASRGDRLSE QGLFSCVTCG ILCFACVAIV QPTDAAATYL ITADRSEFKD WGETSDVSTV  600
VNGDEVLPKS DSCSGWMYKR NPDELFDVPV QSGGLYQSVD DEIVGLIPNT EAQKDTSSLG  660
LLALTYGNSS DSDEDDVDAN NHTEACQNEA KDCSPESGLY CHDAGLHKGG SRNDVFSCSE  720
FSCADVVPLQ IIGSSDKQGT TKSTSESRRH PPPDGTIEYK RRSFPLMEID NLADRCRHQV  780
KEQDASSPSP LAHKAETIAS TAIVEFENKT LPFAGRPDED SSRMHVFCLQ HAVQVEKQLR  840
SIGGVNVLLL CHPDYPNVEA QAKKMAEELG GHYVWSNISF RQASKEDEET IQAALESQEA  900
IHGNGDWAVK LGINLYYSAS LSRSPLYSKQ MPYNLVIYNA FGRSSPVNSP TKDDSLGKGP  960
GKPKKTVVAG KWCGKIWMSN QVHPFLAERD EEEQERGIPS CMKADLKPDR PLESTRVQTG  1020
ETTARTCRTG RKRKAAAEIR PAVKAKSAKV EERDKAAEDS PVNHSQHQCK SNRRNTQRKK  1080
ENLESSNKGN KVVRNRKQFN LETEEEQEGG PSTRLRKRTE KPSKGQGAKS LETKSVAKKQ  1140
PNGLKAKKSP AGSNKMKGKD EKTEYPCDME GCTMGFGSKQ ELVLHKRNIC PVKGCGKKFF  1200
SHKYLVQHRR VHVDERPLKC PWKGCKMSFK WAWARTEHIR VHTGARPYVC AEPGCNQTFR  1260
FVSDFSRHKR KTGHSSSKKG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-75203768346Transcription factor jumonji (Jmj) family protein
6ip4_A4e-75203768346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176182GGKEGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123006.10.0lysine-specific demethylase REF6
TrEMBLA0A068V3I40.0A0A068V3I4_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000392240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49882331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6