PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g10680
Common NameGSCOC_T00042636001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 247aa    MW: 28256.9 Da    PI: 5.3864
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g10680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.12.7e-2281142157
                  TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  rr+R+++t++ql++Le++F + n +ps+e+ ++++++l    +++e++V++WFqNrRa++kk
  Cc04_g10680  81 RRQRWNPTAQQLQILERVFDQgNETPSKEKVKDITAELakhgQISESNVYNWFQNRRARMKK 142
                  89******************99***************************************8 PP
2Wus_type_Homeobox95.83.7e-3181144265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         r+RW+Pt++Q++iLe+++++G  tP+ke++++itaeL+++G+i++ NV++WFQNr+aR ++kq
        Cc04_g10680  81 RRQRWNPTAQQLQILERVFDQGNETPSKEKVKDITAELAKHGQISESNVYNWFQNRRARMKKKQ 144
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1675144IPR009057Homeodomain-like
SuperFamilySSF466899.84E-1877143IPR009057Homeodomain-like
PROSITE profilePS5007116.19678143IPR001356Homeobox domain
SMARTSM003892.4E-1380147IPR001356Homeobox domain
PfamPF000463.4E-2081142IPR001356Homeobox domain
CDDcd000867.91E-1481144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEGQNIHGGN LNNGDDMFVK VMTDEQMEIL GKQIAAYATI CEQLEDLHRA LISQNDPSHF  60
MLRNPYLTPL MTTSSLHRIP RRQRWNPTAQ QLQILERVFD QGNETPSKEK VKDITAELAK  120
HGQISESNVY NWFQNRRARM KKKQVVVENK KTEPETQMVT ESSLEEGEKL KPSEPMIEGQ  180
NYCVQKVSAG NSIFSFDEQG MEMQQPLFAI EGFHRGMSPD KAKIHYLLED MDVNPPGCYD  240
PYIHAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARMKKKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121485.10.0WUSCHEL-related homeobox 8-like
SwissprotQ5QMM34e-54WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A068V2Q10.0A0A068V2Q1_COFCA; Uncharacterized protein
STRINGXP_009777417.11e-59(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2202022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-50WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]