PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g11990
Common NameGSCOC_T00037415001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23403.2 Da    PI: 7.5053
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g11990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.35.4e-1383142356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC......TS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl......gLterqVkvWFqNrRakek 56 
                  ++ ++tk q   Lee F+++++++  +   L+ +l      +L  rqV vWFqNrRa+ k
  Cc04_g11990  83 NKLCLTKAQSALLEESFKQHSTLNPITSLSLSFSLylarelNLRPRQVEVWFQNRRARTK 142
                  56789*************99998887777666555555555*****************98 PP
2HD-ZIP_I/II105.63.8e-3483177291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKve......lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +k+ l+k q++lLEesF+++++L+p    +      lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++y++l++en+rLeke +eL+ +l
  Cc04_g11990  83 NKLCLTKAQSALLEESFKQHSTLNPITSLSlsfslyLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLEKELQELK-AL 177
                  6899*********************8865422222279******************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-1368145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-1376147IPR009057Homeodomain-like
PROSITE profilePS5007113.8878144IPR001356Homeobox domain
SMARTSM003894.3E-1080148IPR001356Homeobox domain
CDDcd000861.16E-882145No hitNo description
PfamPF000461.4E-1083142IPR001356Homeobox domain
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PfamPF021835.2E-10144178IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-23144187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSNSAATIDK CFLLPLSHSA NKASNNEPPL SAADLHRQDS AASSFSNNSV KRERELGSSE  60
EVEIETVSSR VSDEDDDGSN GRNKLCLTKA QSALLEESFK QHSTLNPITS LSLSFSLYLA  120
RELNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCYETL TDENRRLEKE LQELKALKLA  180
QPLYMHAIAN GYTDHVPFLR KGRQSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075542.17e-88homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-55HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A068UWJ61e-149A0A068UWJ6_COFCA; Uncharacterized protein
STRINGVIT_00s0732g00010.t018e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-43HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]