PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g13920
Common NameGSCOC_T00035909001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 213aa    MW: 24468.7 Da    PI: 10.2056
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g13920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.33.8e-2144128290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C    ++++ k     ++++r   r gC+a++ +k+ek g+w+v k++ +HnH+l+
  Cc04_g13920  44 YYDEYALRTGFVTRVLSSRKSERDGSIISRGLGCRGIYSHNSAK----VSSQKRDRRRGGCTAMMLIKREKPGRWVVRKFVRDHNHPLV 128
                  8*********************************7554444444....458899999******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-1944128IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLVDDGTRRL QTSGCGETSL CEVEQGQEPY EDMVFESEGA ARAYYDEYAL RTGFVTRVLS  60
SRKSERDGSI ISRGLGCRGI YSHNSAKVSS QKRDRRRGGC TAMMLIKREK PGRWVVRKFV  120
RDHNHPLVDS LPRRRPTFDE KDKRIQELTA ELRVKKRLSA AYKEQLLSLM KDVENHNEHL  180
STKVQVVRNN LKELEARRQE LVNHNSRTYG KG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126069.11e-154protein FAR-RED IMPAIRED RESPONSE 1-like
RefseqXP_027168592.11e-154protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A068UVU41e-155A0A068UVU4_COFCA; Uncharacterized protein
STRINGXP_009764129.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130991718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-55FAR1 family protein