PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc04_g15080

Common Name

GSCOC_T00004745001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 517aa MW: 58286.7 Da PI: 4.2231

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g15080	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.1	1.1e-09	281	328	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE+e++ ++v ++ W+ a +++ Rt k+++s+++++ Cc04_g15080 281 KWSEEEEEIFTEVVFSHPASlgrnFWNHLAIEFP-SRTKKEIVSYYFNV 328 8**************9999999******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.8E-6	278	331	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.33E-6	279	329	IPR009057	Homeodomain-like
CDD	cd00167	0.00127	281	329	No hit	No description
PROSITE profile	PS50090	6.597	281	329	IPR017877	Myb-like domain
Pfam	PF00249	1.8E-8	281	328	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-6	281	327	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MAGRRLARVM LFHEMDGFVD LKFWLNMVQK RPLSEELYEA LSKQPKLLEP SDKRVSVLEF 60 PDGNIPPKLH ILGEDGAACD KKKGERDESL VDSNLAEFQS YVEKEIDRSL ACSISNSSWA 120 TSTTCEEDVR SEAPCILLSP DHYNLDFPAR TIFHTGDIYS SLLEYPPRKL VPIGSGFQAE 180 IPEWFFNRSS QSLMSDIGNH LDHERQFSGS CLVPMPRSDM SEDTVEKLGD GRIDCSCDDV 240 GSVRCVRQHI TEAREKLRKT LGQEAFVKLG FLEVGEVVAE KWSEEEEEIF TEVVFSHPAS 300 LGRNFWNHLA IEFPSRTKKE IVSYYFNVFM LRRRAEQNRI DVLSIDSDND EWEGTNVSAD 360 EVIEKINGYD DSLVESPAEE DDHNEIFEDN LCEYKDDINA EEASEDNIRL NLDGSKCVSK 420 ESDMCPIDMP DNCSSDQAHQ PLDQVLSDIS GNQNTKHITS DLSSMSSSTG NELFLEPCSS 480 KEWDVGCLTC PKDEDFLPTS SVIEEVFGAG AWNSRD*

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MAGRRLARVM LFHEMDGFVD LKFWLNMVQK RPLSEELYEA LSKQPKLLEP SDKRVSVLEF  60
PDGNIPPKLH ILGEDGAACD KKKGERDESL VDSNLAEFQS YVEKEIDRSL ACSISNSSWA  120
TSTTCEEDVR SEAPCILLSP DHYNLDFPAR TIFHTGDIYS SLLEYPPRKL VPIGSGFQAE  180
IPEWFFNRSS QSLMSDIGNH LDHERQFSGS CLVPMPRSDM SEDTVEKLGD GRIDCSCDDV  240
GSVRCVRQHI TEAREKLRKT LGQEAFVKLG FLEVGEVVAE KWSEEEEEIF TEVVFSHPAS  300
LGRNFWNHLA IEFPSRTKKE IVSYYFNVFM LRRRAEQNRI DVLSIDSDND EWEGTNVSAD  360
EVIEKINGYD DSLVESPAEE DDHNEIFEDN LCEYKDDINA EEASEDNIRL NLDGSKCVSK  420
ESDMCPIDMP DNCSSDQAHQ PLDQVLSDIS GNQNTKHITS DLSSMSSSTG NELFLEPCSS  480
KEWDVGCLTC PKDEDFLPTS SVIEEVFGAG AWNSRD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027123546.1	0.0	AT-rich interactive domain-containing protein 1-like isoform X1
Refseq	XP_027123547.1	0.0	AT-rich interactive domain-containing protein 1-like isoform X1
Refseq	XP_027123548.1	0.0	AT-rich interactive domain-containing protein 1-like isoform X1
TrEMBL	A0A068VFD0	0.0	A0A068VFD0_COFCA; Uncharacterized protein
STRING	XP_009801847.1	1e-137	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25