PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g16000
Common NameGSCOC_T00042390001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 360aa    MW: 39471.4 Da    PI: 6.2475
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g16000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.91e-1271113246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eE++l++++++  G++ W  Ia+ ++ gRt++++k+ w++
      Cc04_g16000  71 GSFTPEEEDLIIKLHAAIGSR-WPIIAQQLP-GRTDNDVKNVWNT 113
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.7731160IPR017877Myb-like domain
SMARTSM00717131566IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-1720111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-102074IPR009057Homeodomain-like
PROSITE profilePS5129417.62565119IPR017930Myb domain
SMARTSM007172.0E-1069117IPR001005SANT/Myb domain
PfamPF002496.5E-1271113IPR001005SANT/Myb domain
CDDcd001672.03E-872115No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1975119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVKPPYCDKI KMQTKEVHLT EEEDTKAHAY APKQGTGNWA AAMPKKSGAR RCGKSCRIRW  60
SGNQRPDPEQ GSFTPEEEDL IIKLHAAIGS RWPIIAQQLP GRTDNDVKNV WNTKLKKKLS  120
AIGIDPVTHR PFSQILADYG NIGGFPKARN RSGCLSRDIK NAFVLKSEQS RGLPERSSHF  180
DSHFGTTISP LAVEPSKQHF MSNCNHISAA RSQSLELLSQ LQAITMVTEA STYTNTAAQI  240
PAECYSSSAS SSPESPPSAT NQAAASPSFS WCDFLLEDAF VPTTYIEEKE NEMKLPPSYD  300
PKSKEMKLSV AAAEEEVDIS AKTVEASSIS CGSFVEAMLE GENGMLSDFH GLLEDPFFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-202011911108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122370.10.0transcription factor MYB35-like
RefseqXP_027124416.10.0transcription factor MYB35-like
TrEMBLA0A068V4V00.0A0A068V4V0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.17e-54MYB family protein